Evidence map›Paper›PMID 15361936›Full record

ArticlePLoS biology2004

A Drosophila pattern recognition receptor contains a peptidoglycan docking groove and unusual L,D-carboxypeptidase activity.

Chung-I Chang, Sébastien Pili-Floury, Mireille Hervé, Claudine Parquet, Yogarany Chelliah, Bruno Lemaitre, Dominique Mengin-Lecreulx, Johann Deisenhofer

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. The Gut Microbiota ofMicroorganisms · 2025
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. PGRP-LB: An Inside View into the Mechanism of the Amidase Reaction.International journal of molecular sciences · 2021
    Article
  8. Article
  9. Article
  10. International journal of molecular sciences · 2020
    Article
  11. Antimicrobial peptides fromRSC advances · 2019
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Chung-I ChangHoward Hughes Medical Institute and Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Sébastien Pili-Floury
Mireille Hervé
Claudine Parquet
Yogarany Chelliah
Bruno Lemaitre
Dominique Mengin-Lecreulx
Johann Deisenhofer
Centre National de la Recherche Scientifique · FRUniversité Paris-Sud · FRCenter for Systems Biology · USHoward Hughes Medical Institute · USThe University of Texas Southwestern Medical Center · USUniversité Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Drosophila peptidoglycan recognition protein SA (PGRP-SA) is critically involved in sensing bacterial infection and activating the Toll signaling pathway, which induces the expression of specific antimicrobial peptide genes. We have determined the crystal structure of PGRP-SA to 2.2-A resolution and analyzed its peptidoglycan (PG) recognition and signaling activities. We found an extended surface groove in the structure of PGRP-SA, lined with residues that are highly diverse among different PGRPs. Mutational analysis identified it as a PG docking groove required for Toll signaling and showed that residue Ser158 is essential for both PG binding and Toll activation. Contrary to the general belief that PGRP-SA has lost enzyme function and serves primarily for PG sensing, we found that it possesses an intrinsic L,D-carboxypeptidase activity for diaminopimelic acid-type tetrapeptide PG fragments but not lysine-type PG fragments, and that Ser158 and His42 may participate in the hydrolytic activity. As L,D-configured peptide bonds exist only in prokaryotes, this work reveals a rare enzymatic activity in a eukaryotic protein known for sensing bacteria and provides a possible explanation of how PGRP-SA mediates Toll activation specifically in response to lysine-type PG.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCarboxypeptidasesCarrier ProteinsChromatography, High Pressure LiquidCrosses, GeneticCrystallography, X-RayDNA Mutational AnalysisDrosophila melanogasterDrosophila ProteinsHydrolysisLysineModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedCarboxypeptidasesCarrier ProteinsDrosophila Proteinsimd protein, DrosophilaLysinePeptidoglycanpeptidoglycan recognition proteinRecombinant ProteinsTl protein, DrosophilaToll-Like ReceptorsTyrosine

Identifiers

PMID15361936
PMCPMC515366
OpenAlexW2047549277

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.