Evidence map›Paper›PMID 15361410›Full record

ArticleBiophysical journal2004

CFTR: a cysteine at position 338 in TM6 senses a positive electrostatic potential in the pore.

Xuehong Liu, Zhi-Ren Zhang, Matthew D Fuller, Joshua Billingsley, Nael A McCarty, David C Dawson

Abstract readComparative Study
In one paragraph

Article in Biophysical journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Positioning of extracellular loop 1 affects pore gating of the cystic fibrosis transmembrane conductance regulator.American journal of physiology. Lung cellular and molecular physiology · 2016
    Article
  3. Article
  4. Cystic fibrosis transmembrane conductance regulator (ABCC7) structure.Cold Spring Harbor perspectives in medicine · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xuehong LiuDepartment of Physiology/Pharmacology, Oregon Health & Science University, Portland, Oregon 97239, USA.
Zhi-Ren Zhang
Matthew D Fuller
Joshua Billingsley
Nael A McCarty
David C Dawson

Funding

CFTR--ION CONDUCTION AND GATING MECHANISMSR01DK045880 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAWSON, DAVID C · 1992 to 2010
$3.5M
The Dynamic Nature of the CFTR Channel Pore: Coupling Gating to PermeationR01DK056481 · NIDDK · GEORGIA INSTITUTE OF TECHNOLOGY · PI MCCARTY, NAEL A · 2001 to 2013
$2.4M
The Dynamic Nature of the CFTR Channel Pore: Coupling Gating to PermeationR56DK056481 · NIDDK · EMORY UNIVERSITY · PI MCCARTY, NAEL A · 2009 to 2009
$396k
Probing the pore of CFTR using chemical modificationF32DK060312 · NIDDK · OREGON HEALTH AND SCIENCE UNIVERSITY · PI LIU, XUEHONG · 2001 to 2003
$142k
CFTR-Ion Conduction and Gating MechanismsR56DK045880 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAWSON, DAVID C · 2007 to 2007
$57k
NIDDK NIH HHS DK45880NIDDK NIH HHS DK56481NIDDK NIH HHS DK60312NIDDK NIH HHS F32 DK060312NIDDK NIH HHS R01 DK045880NIDDK NIH HHS R01 DK056481NIDDK NIH HHS R56 DK045880NIDDK NIH HHS R56 DK056481
6 · The paper itself

Abstract

We investigated the accessibility to protons and thiol-directed reagents of a cysteine substituted at position 338 in transmembrane segment 6 (TM6) of CFTR to test the hypothesis that T338 resides in the pore. Xenopus oocytes expressing T338C CFTR exhibited pH-dependent changes in gCl and I-V shape that were specific to the substituted cysteine. The apparent pKa of T338C CFTR was more acidic than that expected for a cysteine or similar simple thiols in aqueous solution. The pKa was shifted toward alkaline values when a nearby positive charge (R334) was substituted with neutral or negatively charged residues, consistent with the predicted influence of the positive charge of R334, and perhaps other residues, on the titration of a cysteine at 338. The relative rates of chemical modification of T338C CFTR by MTSET+ and MTSES- were also altered by the charge at 334. These observations support a model for CFTR that places T338 within the anion conduction path. The apparent pKa of a cysteine substituted at 338 and the relative rates of reaction of charged thiol-directed reagents provide a crude measure of a positive electrostatic potential that may be due to R334 and other residues near this position in the pore.

Indexed as

Models, BiologicalAmino Acid SubstitutionAnimalsCells, CulturedComputer SimulationCysteineCystic Fibrosis Transmembrane Conductance RegulatorElectric ConductivityHydrogen-Ion ConcentrationIon Channel GatingMembrane PotentialsMutagenesis, Site-DirectedOocytesPorosityRecombinant ProteinsStatic ElectricityCysteineCystic Fibrosis Transmembrane Conductance RegulatorRecombinant Proteins

Identifiers

PMID15361410
PMCPMC1304894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.