Evidence map›Paper›PMID 15347785›Full record

ArticlePlant physiology2004

The Elm1 (ZmHy2) gene of maize encodes a phytochromobilin synthase.

Ruairidh J H Sawers, Philip J Linley, Jose F Gutierrez-Marcos, Teegan Delli-Bovi, Phyllis R Farmer, Takayuki Kohchi, Matthew J Terry, Thomas P Brutnell

Abstract read
In one paragraph

Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  9. Identification and fine mapping of a recessive gene controlling zebra leaf phenotype in maize.Molecular breeding : new strategies in plant improvement · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ruairidh J H SawersBoyce Thompson Institute, Cornell University, Ithaca, NY 14853, USA.
Philip J Linley
Jose F Gutierrez-Marcos
Teegan Delli-Bovi
Phyllis R Farmer
Takayuki Kohchi
Matthew J Terry
Thomas P Brutnell

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The light insensitive maize (Zea mays) mutant elongated mesocotyl1 (elm1) has previously been shown to be deficient in the synthesis of the phytochrome chromophore 3E-phytochromobilin (PPhiB). To identify the Elm1 gene, a maize homolog of the Arabidopsis PPhiB synthase gene AtHY2 was isolated and designated ZmHy2. ZmHy2 encodes a 297-amino acid protein of 34 kD that is 50% identical to AtHY2. ZmHY2 was predicted to be plastid localized and was targeted to chloroplasts following transient expression in tobacco (Nicotiana plumbaginifolia) leaves. Molecular mapping indicated that ZmHy2 is a single copy gene in maize that is genetically linked to the Elm1 locus. Sequence analysis revealed that the ZmHy2 gene of elm1 mutants contains a single G to A transition at the 3' splice junction of intron III resulting in missplicing and premature translational termination. However, flexibility in the splicing machinery allowed a small pool of in-frame ZmHy2 transcripts to accumulate in elm1 plants. In addition, multiple ZmHy2 transcript forms accumulated in both wild-type and elm1 mutant plants. ZmHy2 splice variants were expressed in Escherichia coli and products examined for activity using a coupled apophytochrome assembly assay. Only full-length ZmHY2 (as defined by homology to AtHY2) was found to exhibit PPhiB synthase activity. Thus, the elm1 mutant of maize is deficient in phytochrome response due to a lesion in a gene encoding phytochromobilin synthase that severely compromises the PPhiB pool.

Indexed as

Genes, PlantAmino Acid SequenceBase SequenceDNA, PlantEscherichia coliGenetic LinkageMolecular Sequence DataMutationOxidoreductasesPlastidsRecombinant ProteinsRNA, PlantRNA SplicingSequence Homology, Amino AcidZea maysDNA, PlantOxidoreductasesphytochromobilin synthaseRecombinant ProteinsRNA, Plant

Identifiers

PMID15347785
PMCPMC523340

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.