Evidence map›Paper›PMID 15345056›Full record

ArticleGenome biology2004

Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae.

Jeanne Boyer, Gwenaël Badis, Cécile Fairhead, Emmanuel Talla, Florence Hantraye, Emmanuelle Fabre, Gilles Fischer, Christophe Hennequin, Romain Koszul, Ingrid Lafontaine and 5 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Genome biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 45 citations in OpenAlex.

  1. Mutated Transcripts ofMolecular syndromology · 2023
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Quantitative nature of overexpression experiments.Molecular biology of the cell · 2015
    Article
  8. New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  9. Article
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  20. A high-resolution map of transcription in the yeast genome.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Jeanne BoyerUnité de Génétique Moléculaire des Levures, URA2171 CNRS and UFR 927 Université Pierre et Marie Curie, Paris-Cedex 15, France. jboyer@pasteur.fr
Gwenaël Badis
Cécile Fairhead
Emmanuel Talla
Florence Hantraye
Emmanuelle Fabre
Gilles Fischer
Christophe Hennequin
Romain Koszul
Ingrid Lafontaine
Odile Ozier-Kalogeropoulos
Miria Ricchetti
Guy-Franck Richard
Agnès Thierry
Bernard Dujon
Sorbonne Université · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have screened the genome of Saccharomyces cerevisiae for fragments that confer a growth-retardation phenotype when overexpressed in a multicopy plasmid with a tetracycline-regulatable (Tet-off) promoter. We selected 714 such fragments with a mean size of 700 base-pairs out of around 84,000 clones tested. These include 493 in-frame open reading frame fragments corresponding to 454 distinct genes (of which 91 are of unknown function), and 162 out-of-frame, antisense and intergenic genomic fragments, representing the largest collection of toxic inserts published so far in yeast.

Indexed as

Genome, FungalCloning, MolecularDNA, FungalGene Expression Regulation, FungalGenes, FungalGenes, LethalGenes, SuppressorOpen Reading FramesPhenotypeReading FramesSaccharomyces cerevisiaeTransfectionTransgenesDNA, Fungal

Identifiers

PMID15345056
PMCPMC522879
OpenAlexW2099257112

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.