Evidence map›Paper›PMID 15342577›Full record

ArticleJournal of bacteriology2004

The Bacteroides fragilis pathogenicity island is contained in a putative novel conjugative transposon.

Augusto A Franco

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 57 citations in OpenAlex.

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  11. Microorganisms · 2025
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  12. PathogenicbioRxiv : the preprint server for biology · 2024
    Article
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  14. Review
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  17. The Emerging Fish PathogenFrontiers in microbiology · 2017
    Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Augusto A FrancoDivision of Infectious Diseases, Johns Hopkins University School of Medicine, Ross Bldg., Rm. 1167, 720 Rutland Ave., Baltimore, MD 21205, USA. afranco@jhem.jhmi.edu
Johns Hopkins University · US

Funding

PHS HHS R01A148708
6 · The paper itself

Abstract

The genetic element flanking the Bacteroides fragilis pathogenicity island (BfPAI) in enterotoxigenic B. fragilis (ETBF) strain 86-5443-2-2 and a related genetic element in NCTC 9343 were characterized. The results suggested that these genetic elements are members of a new family of conjugative transposons (CTns) not described previously. These putative CTns, designated CTn86 and CTn9343 for ETBF 86-5443-2-2 and NCTC 9343, respectively, differ from previously described Bacteroides species CTns in a number of ways. These new transposons do not carry tetQ, and the excision from the chromosome to form a circular intermediate is not regulated by tetracycline; they are predicted to differ in their mechanism of transposition; and their sequences have very limited similarity with CTnDOT or other described CTns. CTn9343 is 64,229 bp in length, contains 61 potential open reading frames, and both ends contain IS21 transposases. Colony blot hybridization, PCR, and sequence analysis indicated that CTn86 has the same structure as CTn9343 except that CTn86 lacks a approximately 7-kb region containing truncated integrase (int2) and rteA genes and it contains the BfPAI integrated between the mob region and the bfmC gene. If these putative CTns were to be demonstrated to be transmissible, this would suggest that the bft gene can be transferred from ETBF to nontoxigenic B. fragilis strains by a mechanism similar to that for the spread of antibiotic resistance genes.

Indexed as

Conjugation, GeneticDNA Transposable ElementsBacterial ProteinsBacterial ToxinsBacteroides fragilisDNA, BacterialGene OrderGenes, BacterialGene Transfer, HorizontalGenomic IslandsIntegrasesMetalloendopeptidasesMolecular Sequence DataOpen Reading FramesRecombination, GeneticSequence Analysis, DNABacterial ProteinsBacterial ToxinsBacteroides fragilis toxinDNA, BacterialDNA Transposable ElementsIntegrasesMetalloendopeptidasesMob protein, BacteriaRteA protein, BacteriodesTetracyclineTransposases

Identifiers

PMID15342577
PMCPMC515173
OpenAlexW2096871356

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.