Evidence map›Paper›PMID 15340080›Full record

ArticleMolecular and cellular biology2004

cis-Acting determinants of heterochromatin formation on Drosophila melanogaster chromosome four.

Fang-Lin Sun, Karmella Haynes, Cory L Simpson, Susan D Lee, Lynne Collins, Jo Wuller, Joel C Eissenberg, S C R Elgin

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Heterochromatin-based silencing of a foreign tandem repeat inbioRxiv : the preprint server for biology · 2025
    Article
  5. CRIF counteracts oncogenic Ras and regulates heterochromatin.Molecular genetics and genomics : MGG · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Epigenetics and genome stability.Mammalian genome : official journal of the International Mammalian Genome Society · 2020
    Review
  16. Article
  17. Article
  18. TheGenetics · 2018
    Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Fang-Lin SunFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Karmella Haynes
Cory L Simpson
Susan D Lee
Lynne Collins
Jo Wuller
Joel C Eissenberg
S C R Elgin

Funding

Formation, Structure and Function in HeterochromatinR01GM068388 · NIGMS · WASHINGTON UNIVERSITY · PI ELGIN, SARAH C.R. · 2003 to 2011
$3.9M
FORMATION, STRUCTURE AND FUNCTION IN HETEROCHROMATINR01HD023844 · NICHD · WASHINGTON UNIVERSITY · PI ELGIN, SARAH C. · 1988 to 2002
$1.0M
MECHANISM OF EPIGENETIC REGULATION IN DROSOPHILAR55GM057005 · NIGMS · SAINT LOUIS UNIVERSITY · PI EISSENBERG, JOEL C · 1998 to 1998
–
NICHD NIH HHS HD23844NIGMS NIH HHS GM068388NIGMS NIH HHS GM57005NIGMS NIH HHS R01 GM068388
6 · The paper itself

Abstract

The heterochromatic domains of Drosophila melanogaster (pericentric heterochromatin, telomeres, and the fourth chromosome) are characterized by histone hypoacetylation, high levels of histone H3 methylated on lysine 9 (H3-mK9), and association with heterochromatin protein 1 (HP1). While the specific interaction of HP1 with both H3-mK9 and histone methyltransferases suggests a mechanism for the maintenance of heterochromatin, it leaves open the question of how heterochromatin formation is targeted to specific domains. Expression characteristics of reporter transgenes inserted at different sites in the fourth chromosome define a minimum of three euchromatic and three heterochromatic domains, interspersed. Here we searched for cis-acting DNA sequence determinants that specify heterochromatic domains. Genetic screens for a switch in phenotype demonstrate that local deletions or duplications of 5 to 80 kb of DNA flanking a transposon reporter can lead to the loss or acquisition of variegation, pointing to short-range cis-acting determinants for silencing. This silencing is dependent on HP1. A switch in transgene expression correlates with a switch in chromatin structure, judged by nuclease accessibility. Mapping data implicate the 1360 transposon as a target for heterochromatin formation. We propose that heterochromatin formation is initiated at dispersed repetitive elements along the fourth chromosome and spreads for approximately 10 kb or until encountering competition from a euchromatic determinant.

Indexed as

AnimalsAnimals, Genetically ModifiedBase SequenceChromosomal Proteins, Non-HistoneChromosome MappingChromosomesDNADrosophila melanogasterDrosophila ProteinsEye AbnormalitiesFemaleGene SilencingGenes, InsectGenes, ReporterGenetic Complementation TestHeterochromatinChromosomal Proteins, Non-HistoneDNADrosophila ProteinsHeterochromatinheterochromatin protein 1, Drosophila

Identifiers

PMID15340080
PMCPMC515050

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.