Evidence map›Paper›PMID 15339808›Full record

ArticleBiophysical journal2004

A study of low pH-induced refolding of Env of avian sarcoma and leukosis virus into a six-helix bundle.

R M Markosyan, P Bates, F S Cohen, G B Melikyan

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Fusion of Enveloped Viruses in Endosomes.Traffic (Copenhagen, Denmark) · 2016
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Mechanics of membrane fusion.Nature structural & molecular biology · 2008
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

R M MarkosyanDepartment of Molecular Biophysics and Physiology, Rush University Medical Center, Chicago, Illinois 60612, USA.
P Bates
F S Cohen
G B Melikyan
Rush University Medical Center · USUniversity of Pennsylvania · US

Funding

The Mechanism of Arenavirus Entry into CellsR01AI053668 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI MELIKIAN, GREGORY B · 2003 to 2023
$7.4M
MODEL SYSTEM FOR PHYSIOLOGICAL EXOCYTOSISR01GM027367 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI COHEN, FREDRIC S · 1985 to 2009
$4.2M
CHARACTERIZATION OF EBOLA VIRAL GYLCOPROTEINSR01AI043455 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BATES, PAUL F · 1999 to 2003
$1.0M
FUNCTIONAL ANALYSIS OF RSV ENVELOPE GLYCOPROTEINR01CA076256 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BATES, PAUL F · 1998 to 2002
$787k
EBOLA VIRAL GYLCOPROTEINSR21AI043455 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BATES, PAUL F · 1998 to 1998
–
NCI NIH HHS CA76256NCI NIH HHS R01 CA076256NIAID NIH HHS AI053668NIAID NIH HHS AI43455NIAID NIH HHS R01 AI043455NIAID NIH HHS R01 AI053668NIGMS NIH HHS GM27367NIGMS NIH HHS R01 GM027367
6 · The paper itself

Abstract

The fusion protein of avian sarcoma and leukosis virus is likely to fold into a six-helix bundle as part of its final configuration. A peptide, R99, inhibits fusion, probably by binding into the grooves of the triple-stranded coiled coil that becomes the central core of the six-helix bundle. The stages at which the envelope protein (Env) of avian sarcoma and leukosis virus subgroup A folds into a bundle during low pH-induced fusion were determined. Effector cells expressing Env were bound to target cells expressing the cognate receptor Tva, and intermediates of fusion were created. R99 was added and the extent of fusion inhibition was used to distinguish between a prebundle state with exposed grooves and a state in which the grooves were no longer exposed. The native conformation of Env was not sensitive to R99. But adding a soluble form of Tva to effector cells conferred sensitivity. Acidic pH applied at low temperature created an intermediate state of local hemifusion. Surprisingly, R99 caused these locally hemifused membranes to separate. This indicates that the grooves of Env were still exposed, that prebundle configurations of Env stabilized hemifused states, and that binding of R99 altered the conformation of Env. In the presence of an inhibitory lipid that blocks fusion before hemifusion, applying low pH at 37 degrees C created an intermediate in which R99 was without effect. This suggests that the six-helix bundle can form before hemifusion and that subsequent conformational changes, such as formation of the trimeric hairpin, are responsible for pore formation and/or growth.

Indexed as

3T3 CellsAnimalsAvian Sarcoma VirusesCell Membrane PermeabilityDose-Response Relationship, DrugGene Products, envHydrogen-Ion ConcentrationMembrane FusionMiceModels, BiologicalPeptidesProtein ConformationProtein FoldingProtein Structure, SecondaryGene Products, envPeptides

Identifiers

PMID15339808
PMCPMC1304797
OpenAlexW2063310778

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.