ArticleMolecular genetics and genomics : MGG2004
A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans.
Article in Molecular genetics and genomics : MGG, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 37 citations in OpenAlex.
- Development of a Real-Time Quantitative PCR Assay for Direct Detection and Quantification of the Root-Lesion NematodeInternational journal of molecular sciences · 2025Article
- The αInternational journal of molecular sciences · 2022Article
- Difference in lesion formation by male and femaleJournal of nematology · 2020Article
- Heterodera glycines utilizes promiscuous spliced leaders and demonstrates a unique preference for a species-specific spliced leader over C. elegans SL1.Scientific reports · 2019Article
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- Top 10 plant-parasitic nematodes in molecular plant pathology.Molecular plant pathology · 2013Review
- Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida.Molecular plant pathology · 2009Article
- Expressed sequence tags of the peanut pod nematode Ditylenchus africanus: the first transcriptome analysis of an Anguinid nematode.Molecular and biochemical parasitology · 2009Article
- The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi.Veterinary parasitology · 2009Article
- Molecular determinants archetypical to the phylum Nematoda.BMC genomics · 2009Article
- Article
- Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans.PLoS neglected tropical diseases · 2008Article
- Exploring the transcriptome of the burrowing nematode Radopholus similis.Molecular genetics and genomics : MGG · 2008Article
- Mining the secretome of the root-knot nematode Meloidogyne chitwoodi for candidate parasitism genes.Molecular plant pathology · 2008Article
- Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines.Genome biology · 2007Article
- Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii.Parasitology research · 2006Article
- Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species.Genome biology · 2006Article
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Authors and funding
10 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plant-parasitic nematodes are important and cosmopolitan pathogens of crops. Here, we describe the generation and analysis of 1928 expressed sequence tags (ESTs) of a splice-leader 1 (SL1) library from mixed life stages of the root-lesion nematode Pratylenchus penetrans. The ESTs were grouped into 420 clusters and classified by function using the Gene Ontology (GO) hierarchy and the Kyoto KEGG database. Approximately 80% of all translated clusters show homology to Caenorhabditis elegans proteins, and 37% of the C. elegans gene homologs had confirmed phenotypes as assessed by RNA interference tests. Use of an SL1-PCR approach, while ensuring the cloning of the 5' ends of mRNAs, has demonstrated bias toward short transcripts. Putative nematode-specific and Pratylenchus -specific genes were identified, and their implications for nematode control strategies are discussed.
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