Evidence map›Paper›PMID 15334113›Full record

ArticleGene therapy2004

Ultraviolet light selection assay to optimize oligonucleotide correction of mutations in endogenous xeroderma pigmentosum genes.

A Terunuma, J Ye, S Emmert, S G Khan, K H Kraemer, J C Vogel

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Gene therapy, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Co-infection of HSV-1 amplicons containing theBiochemistry and biophysics reports · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

A TerunumaDermatology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA.
J Ye
S Emmert
S G Khan
K H Kraemer
J C Vogel
National Cancer Institute · US

Funding

DNA REPAIR IN HUMAN CANCER-PRONE GENETIC DISEASESZ01BC004517 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KRAEMER, KENNETH H · 1996 to 2008
$2.7M
Biology of Keratinocyte and Cancer Stem CellsZ01BC010542 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI VOGEL, JONATHAN · 2003 to 2008
$2.2M
Keratinocyte Gene TherapyZ01SC003670 · SC · DIVISION OF CLINICAL SCIENCES - NCI · PI VOGEL, JONATHAN · 1996 to 2008
$492k
Intramural NIH HHS Z01 BC004517
6 · The paper itself

Abstract

Various oligonucleotide (ODN)-based approaches have been proposed for their ability to correct mutated genes at the normal chromosomal locations. However, the reported gene correction frequencies of these approaches have varied markedly in different experimental settings, including when different tissues or cell types are targeted. In order to find the optimal ODN-based approach for a specific target tissue, an assay system that allows direct comparison of the different methods on that tissue is necessary. Herein, we describe an XP-UVC selection assay that can be used to evaluate and compare gene correction frequencies in different cell types obtained from a xeroderma pigmentosum (XP) patient, following treatment by different ODN-based approaches. As an experimental example, the XP-UVC selection assay was used to assess the ability of chimeric RNA/DNA ODN to correct point mutations in the XPA gene. This assay can be used to assess and evaluate other types of ODN-based approaches, and to further optimize them.

Indexed as

Point MutationUltraviolet RaysBase SequenceCell DeathCell LineDNA-Binding ProteinsDNA RepairDose-Response Relationship, RadiationFemaleGenetic TherapyHumansLymphocytesMaleMolecular Sequence DataOligonucleotidesPolymorphism, Restriction Fragment LengthDNA-Binding ProteinsOligonucleotidesXeroderma Pigmentosum Group A ProteinXPA protein, human

Identifiers

PMID15334113
OpenAlexW2093690582

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.