Evidence map›Paper›PMID 15331396›Full record

ArticleThe American journal of pathology2004

Highly tissue substructure-specific effects of human papilloma virus in mucosa of HIV-infected patients revealed by laser-dissection microscopy-assisted gene expression profiling.

Nicole Baumgarth, Richard Szubin, Greg M Dolganov, Mitchell R Watnik, Deborah Greenspan, Maria Da Costa, Joel M Palefsky, Richard Jordan, Mario Roederer, John S Greenspan

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The American journal of pathology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
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  11. Rigid interferon-alpha subtype responses of human plasmacytoid dendritic cells.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2008
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Nicole BaumgarthCenter for Comparative Medicine, University of California, Davis, CA, USA. nbaumgarth@ucdavis.edu.
Richard Szubin
Greg M Dolganov
Mitchell R Watnik
Deborah Greenspan
Maria Da Costa
Joel M Palefsky
Richard Jordan
Mario Roederer
John S Greenspan
Pulmonary and Critical Care Associates · USUniversity of California, San Francisco · USUniversity of California, Davis · USNational Institutes of Health · US

Funding

Transgenic Mouse and Biobank CoreP01CA095616 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DEPINHO, RONALD ANTHONY · 2003 to 2012
$20.3M
The Oral Mucosa in HIV Disease: Innate ImmunityP01DE016839 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AGABIAN, NINA · 2005 to 2007
$2.6M
SURFACE ANTIGENS OF ORAL BACTEROIDES SPECIESR01DE007496 · NIDCR · UNIVERSITY OF FLORIDA · PI PROGULSKE-FOX, ANN · 1991 to 2005
$1.4M
T CELL INFLAMMATION AND MUCIN HYPERSECRETION IN COPDR01HL066564 · NHLBI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FAHY, JOHN V · 2001 to 2004
$1.3M
SURFACE ANTIGENS OF ORAL BACTEROIDES GINGIVALISR23DE007496 · NIDCR · UNIVERSITY OF FLORIDA · PI PROGULSKE-FOX, ANN · 1986 to 1986
–
SURFACE ANTIGENS OF ORAL BACTEROIDES GINGIVALISR29DE007496 · NIDCR · UNIVERSITY OF FLORIDA · PI PROGULSKE-FOX, ANN · 1987 to 1990
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NCI NIH HHS P01 CA095616NHLBI NIH HHS 5 P50 HL66564NHLBI NIH HHS R01 HL066564NIAID NIH HHS 1 P01 AI-00-012NIDCR NIH HHS DE-P01 07496NIDCR NIH HHS P01 DE016839
6 · The paper itself

Abstract

Human papilloma virus (HPV) causes focal infections of epithelial layers in skin and mucosa. HIV-infected patients on highly active antiretroviral therapy (HAART) appear to be at increased risk of developing HPV-induced oral warts. To identify the mechanisms that allow long-term infection of oral epithelial cells in these patients, we used a combination of laser-dissection microscopy (LDM) and highly sensitive and quantitative, non-biased, two-step multiplex real-time RT-PCR to study pathogen-induced alterations of specific tissue subcompartments. Expression of 166 genes was compared in three distinct epithelial and subepithelial compartments isolated from biopsies of normal mucosa from HIV-infected and non-infected patients and of HPV32-induced oral warts from HIV-infected patients. In contrast to the underlying HIV infection and/or HAART, which did not significantly elaborate tissue substructure-specific effects, changes in oral warts were strongly tissue substructure-specific. HPV 32 seems to establish infection by selectively enhancing epithelial cell growth and differentiation in the stratum spinosum and to evade the immune system by actively suppressing inflammatory responses in adjacent underlying tissues. With this highly sensitive and quantitative method tissue-specific expression of hundreds of genes can be studied simultaneously in a few cells. Because of its large dynamic measurement range it could also become a method of choice to confirm and better quantify results obtained by microarray analysis.

Indexed as

Gene Expression ProfilingAdultBiopsyDNA, ViralEpithelial CellsFemaleHIV InfectionsHumansMaleMicroscopyMiddle AgedMouth DiseasesMouth MucosaPapillomaviridaeReverse Transcriptase Polymerase Chain ReactionWartsDNA, Viral

Identifiers

PMID15331396
PMCPMC1618607
OpenAlexW2048837058

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.