Evidence map›Paper›PMID 15329799›Full record

ArticleAmerican journal of human genetics2004

Polymorphisms in the trace amine receptor 4 (TRAR4) gene on chromosome 6q23.2 are associated with susceptibility to schizophrenia.

Jubao Duan, Maria Martinez, Alan R Sanders, Cuiping Hou, Naruya Saitou, Takashi Kitano, Bryan J Mowry, Raymond R Crowe, Jeremy M Silverman, Douglas F Levinson and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 106 citations in OpenAlex.

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  8. 90 years of monoamine oxidase: some progress and some confusion.Journal of neural transmission (Vienna, Austria : 1996) · 2018
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  12. Currently recognized genes for schizophrenia: High-resolution chromosome ideogram representation.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Jubao DuanCenter for Psychiatric Genetics, Department of Psychiatry and Behavioral Sciences, Evanston Northwestern Healthcare and Feinberg School of Medicine, Northwestern University, Evanston, IL, USA.
Maria Martinez
Alan R Sanders
Cuiping Hou
Naruya Saitou
Takashi Kitano
Bryan J Mowry
Raymond R Crowe
Jeremy M Silverman
Douglas F Levinson
Pablo V Gejman
Northwestern University · USIcahn School of Medicine at Mount Sinai · USPark Centre for Mental Health · AUPhysiopathologie et Epidémiologie des Maladies Respiratoires · FRUniversity of Iowa · US

Funding

DIAGNOSTIC CENTER FOR LINKAGE STUDIES OF SCHIZOPHRENIAU01MH046276 · NIMH · WASHINGTON UNIVERSITY · PI CLONINGER, C. ROBERT · 1989 to 1996
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DIAGNOSTIC CENTER FOR SCHIZOPHRENIA LINKAGE STUDIESU01MH046289 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI KAUFMANN, CHARLES A · 1989 to 1996
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LINKAGE STUDIES OF SCHIZOPHRENIAU01MH046318 · NIMH · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI TSUANG, MING T. · 1989 to 1996
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NIMH NIH HHS U01 MH046276NIMH NIH HHS U01 MH046289NIMH NIH HHS U01 MH046318
6 · The paper itself

Abstract

Several linkage studies across multiple population groups provide convergent support for a susceptibility locus for schizophrenia--and, more recently, for bipolar disorder--on chromosome 6q13-q26. We genotyped 192 European-ancestry and African American (AA) pedigrees with schizophrenia from samples that previously showed linkage evidence to 6q13-q26, focusing on the MOXD1-STX7-TRARs gene cluster at 6q23.2, which contains a number of prime candidate genes for schizophrenia. Thirty-one screening single-nucleotide polymorphisms (SNPs) were selected, providing a minimum coverage of at least 1 SNP/20 kb. The association observed with rs4305745 (P=.0014) within the TRAR4 (trace amine receptor 4) gene remained significant after correction for multiple testing. Evidence for association was proportionally stronger in the smaller AA sample. We performed database searches and sequenced genomic DNA in a 30-proband subsample to obtain a high-density map of 23 SNPs spanning 21.6 kb of this gene. Single-SNP analyses and also haplotype analyses revealed that rs4305745 and/or two other polymorphisms in perfect linkage disequilibrium (LD) with rs4305745 appear to be the most likely variants underlying the association of the TRAR4 region with schizophrenia. Comparative genomic analyses further revealed that rs4305745 and/or the associated polymorphisms in complete LD with rs4305745 could potentially affect gene expression. Moreover, RT-PCR studies of various human tissues, including brain, confirm that TRAR4 is preferentially expressed in those brain regions that have been implicated in the pathophysiology of schizophrenia. These data provide strong preliminary evidence that TRAR4 is a candidate gene for schizophrenia; replication is currently being attempted in additional clinical samples.

Indexed as

Polymorphism, GeneticBase SequenceBlack or African AmericanCell Cycle ProteinsChromosome MappingChromosomes, Human, Pair 6Databases, GeneticDNA Mutational AnalysisGene ExpressionHaplotypesHumansLinkage DisequilibriumMolecular Sequence DataNuclear ProteinsPedigreePolymorphism, Single NucleotideCell Cycle ProteinsNuclear ProteinsReceptors, G-Protein-CoupledTAAR6 protein, humanTrace Amine-Associated Receptors

Identifiers

PMID15329799
PMCPMC1182049
OpenAlexW2124027537

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.