Evidence map›Paper›PMID 15328368›Full record

ArticleNucleic acids research2004

Thioredoxin can influence gene expression by affecting gyrase activity.

Kuanyu Li, Cécile Pasternak, Elisabeth Härtig, Kerstin Haberzettl, Anthony Maxwell, Gabriele Klug

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

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  14. RHL1 is an essential component of the plant DNA topoisomerase VI complex and is required for ploidy-dependent cell growth.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kuanyu LiInstitut für Mikrobiologie und Molekularbiologie, University of Giessen, Heinrich-Buff-Ring 26-32, D-35392 Giessen, Germany.
Cécile Pasternak
Elisabeth Härtig
Kerstin Haberzettl
Anthony Maxwell
Gabriele Klug
University of Giessen · DE

Funding

Biotechnology and Biological Sciences Research Council BBS/E/J/00000201
6 · The paper itself

Abstract

The expression of many genes of facultatively photosynthetic bacteria of the genus Rhodobacter is controlled by the oxygen tension. Among these are the genes of the puf and puc operons, which encode proteins of the photosynthetic apparatus. Previous results revealed that thioredoxins are involved in the regulated expression of these operons, but it remained unsolved as to the mechanisms by which thioredoxins affect puf and puc expression. Here we show that reduced TrxA of Rhodobacter capsulatus and Rhodobacter sphaeroides and oxidized TrxC of R.capsulatus interact with DNA gyrase and alter its DNA supercoiling activity. While TrxA enhances supercoiling, TrxC exerts a negative effect on this activity. Furthermore, inhibition of gyrase activity strongly reduces puf and puc expression. Our results reveal a new signaling pathway by which oxygen can affect the expression of bacterial genes.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBacteriochlorophyllsDNA GyraseDNA, SuperhelicalEnzyme InhibitorsMembrane ProteinsMutationNovobiocinPhotosynthesisRhodobacterRhodobacter capsulatusRhodobacter sphaeroidesSignal TransductionThioredoxinsTopoisomerase II InhibitorsBacterial ProteinsBacteriochlorophyllsDNA GyraseDNA, SuperhelicalEnzyme InhibitorsMembrane ProteinsNovobiocinThioredoxinsTopoisomerase II Inhibitors

Identifiers

PMID15328368
PMCPMC516065
OpenAlexW2135671499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.