Evidence map›Paper›PMID 15326474›Full record

ArticleOncogene2004

Gastrointestinal stromal tumors (GISTs) with KIT and PDGFRA mutations have distinct gene expression profiles.

Subbaya Subramanian, Robert B West, Christopher L Corless, Wenbin Ou, Brian P Rubin, Kent-Man Chu, Suet Yi Leung, Siu Tsan Yuen, Shirley Zhu, Tina Hernandez-Boussard and 7 more

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 148 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Retroperitoneal extra gastrointestinal stromal tumor: A case report.International journal of surgery case reports · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Stomatin plays a suppressor role in non-small cell lung cancer metastasis.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2019
    Article
  13. Review
  14. Gastrointestinal stromal tumor enhancers support a transcription factor network predictive of clinical outcome.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  15. Article
  16. Review
  17. Review
  18. Revisiting a dogma: similar survival of patients with small bowel and gastric GIST. A population-based propensity score SEER analysis.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 3 countries.

Subbaya SubramanianDepartment of Pathology, Stanford University Medical Center, Stanford, CA 94305, USA.
Robert B West
Christopher L Corless
Wenbin Ou
Brian P Rubin
Kent-Man Chu
Suet Yi Leung
Siu Tsan Yuen
Shirley Zhu
Tina Hernandez-Boussard
Kelli Montgomery
Torsten O Nielsen
Rajiv M Patel
John R Goldblum
Michael C Heinrich
Jonathan A Fletcher
Matt van de Rijn
Stanford University · USUniversity of Hong Kong · HKBrigham and Women's Hospital · USCleveland Clinic · USOregon Health & Science University · USStanford Medicine · USUniversity of Washington Medical Center · USVancouver General Hospital · CA

Funding

A CANCER TAXONOMY BASED ON GENE EXPRESSION PATTERNSU01CA085129 · NCI · STANFORD UNIVERSITY · PI BROWN, PATRICK O. · 1999 to 2003
$8.5M
NCI NIH HHS CA85129
6 · The paper itself

Abstract

Most GISTs require oncogenic activation of the KIT or PDGFRA receptor tyrosine kinase proteins, and the genomic mechanisms of oncogene activation are heterogeneous. Notably, the kinase mutation type correlates with both tumor biology and imatinib response. For example, GISTs with KIT exon 11 mutations are typically gastric and have excellent imatinib response, whereas those with KIT exon 9 mutations generally arise in the small bowel and are less responsive to imatinib. To identify genes that might contribute to these biological differences, we carried out gene expression profiling of 26 GISTs with known KIT and PDGFRA mutational status. Expression differences were then evaluated further by RNA in situ hybridization, immunohistochemistry, and immunoblotting. Unsupervised hierarchical clustering grouped tumors with similar mutations together, but the distinction between the different groups was not absolute. Differentially expressed genes included ezrin, p70S6K, and PKCs, which are known to have key roles in KIT or PDGFRA signaling, and which might therefore contribute to the distinctive clinicopathological features in GISTs with different mutation types. These gene products could serve as highly selective therapeutic targets in GISTs containing the KIT or PDGFRA mutational types with which they are associated.

Indexed as

AdolescentChildChild, PreschoolCytoskeletal ProteinsEzrinFemaleGastrointestinal NeoplasmsGene Expression ProfilingHumansIntestinal NeoplasmsMaleOncogene ProteinsOncogenesPhosphoproteinsProtein Kinase CProto-Oncogene Proteins c-kitCytoskeletal ProteinsEzrinOncogene ProteinsPhosphoproteinsProtein Kinase CProto-Oncogene Proteins c-kitReceptor, Platelet-Derived Growth Factor alpha

Identifiers

PMID15326474
OpenAlexW2155186551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.