Evidence map›Paper›PMID 15326296›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases.

Patricia Pellicena, David S Karow, Elizabeth M Boon, Michael A Marletta, John Kuriyan

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 268 citations in OpenAlex.

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  13. Ultrafast dynamics of heme distortion in the OCommunications chemistry · 2021
    Article
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  18. Article
  19. Gas Sensing by Bacterial H-NOX Proteins: An MD Study.Molecules (Basel, Switzerland) · 2020
    Article
  20. Article

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Patricia PellicenaDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.
David S Karow
Elizabeth M Boon
Michael A Marletta
John Kuriyan
Lawrence Berkeley National Laboratory · USUniversity of California, Berkeley · US

Funding

Structural Investigations of Guanylyl Cyclase FunctionF32GM068262 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI PELLICENA, PATRICIA · 2003 to 2004
$73k
NIGMS NIH HHS F32 GM068262
6 · The paper itself

Abstract

Soluble guanylate cyclases are nitric oxide-responsive signaling proteins in which the nitric oxide sensor is a heme-binding domain of unknown structure that we have termed the heme-NO and oxygen binding (H-NOX) domain. H-NOX domains are also found in bacteria, either as isolated domains, or are fused through a membrane-spanning region to methyl-accepting chemotaxis proteins. We have determined the crystal structure of an oxygen-binding H-NOX domain of one such signaling protein from the obligate anaerobe Thermoanaerobacter tengcongensis at 1.77-angstroms resolution, revealing a protein fold unrelated to known structures. Particularly striking is the structure of the protoporphyrin IX group, which is distorted from planarity to an extent not seen before in protein-bound heme groups. Comparison of the structure of the H-NOX domain in two different crystal forms suggests a mechanism whereby alteration in the degree of distortion of the heme group is coupled to changes on the molecular surface of the H-NOX domain and potentially to changes in intermolecular interactions.

Indexed as

Amino Acid SequenceChemotaxisGuanylate CyclaseHemeMolecular Sequence DataOxygenProtein Structure, TertiaryGuanylate CyclaseHemeOxygen

Identifiers

PMID15326296
PMCPMC516465
OpenAlexW2059108388

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.