Evidence map›Paper›PMID 15322879›Full record

ArticleDevelopment genes and evolution2004

Conservation of functional domain structure in bicarbonate-regulated "soluble" adenylyl cyclases in bacteria and eukaryotes.

Mime Kobayashi, Jochen Buck, Lonny R Levin

Open access · greenAbstract readComparative Study
In one paragraph

Article in Development genes and evolution, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

  1. The role of soluble adenylyl cyclase in sensing and regulating intracellular pH.Pflugers Archiv : European journal of physiology · 2024
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Functional Significance of the Adcy10-Dependent Intracellular cAMP Compartments.Journal of cardiovascular development and disease · 2018
    Review
  7. Article
  8. Article
  9. Crystal structures of human soluble adenylyl cyclase reveal mechanisms of catalysis and of its activation through bicarbonate.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Bicarbonate-sensing soluble adenylyl cyclase is an essential sensor for acid/base homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Mime KobayashiDepartment of Pharmacology, Weill Medical College of Cornell University, 1300 York Avenue, Room E-505, New York, NY 10021, USA. mime@nttbrl.jp
Jochen Buck
Lonny R Levin
Cornell University · USNTT Basic Research Laboratories · JP

Funding

BICARBONATE REGULATED ADENYLYL CYCLASER01GM062328 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI BUCK, JOCHEN, LEVIN, LONNY R · 2001 to 2013
$4.6M
SOLUBLE ADENYLYL CYCLASE ACTIVITY IN MALE GERM CELLSR01HD038722 · NICHD · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI LEVIN, LONNY R · 2001 to 2004
$1.2M
NICHD NIH HHS HD38722NICHD NIH HHS HD42060NICHD NIH HHS R01 HD038722NIGMS NIH HHS GM62328NIGMS NIH HHS R01 GM062328
6 · The paper itself

Abstract

Soluble adenylyl cyclase (sAC) is an evolutionarily conserved bicarbonate sensor. In mammals, it is responsible for bicarbonate-induced, cAMP-dependent processes in sperm required for fertilization and postulated to be involved in other bicarbonate- and carbon dioxide-dependent functions throughout the body. Among eukaryotes, sAC-like cyclases have been detected in mammals and in the fungi Dictyostelium; these enzymes display extensive similarity extending through two cyclase catalytic domains and a long carboxy terminal extension. sAC-like cyclases are also found in a number of bacterial phyla (Cyanobacteria, Actinobacteria, and Proteobacteria), but these enzymes generally possess only a single catalytic domain and little, if any, homology with the remainder of the mammalian protein. Database mining through a number of recently sequenced genomes identified sAC orthologues in additional metazoan phyla (Arthropoda and Chordata) and additional bacterial phyla (Chloroflexi). Interestingly, the Chloroflexi sAC-like cyclases, a family of three enzymes from the thermophilic eubacterium, Chloroflexus aurantiacus, are more similar to eukaryotic sAC-like cyclases (i.e., mammalian sAC and Dictyostelium SgcA) than they are to other bacterial adenylyl cyclases (ACs) (i.e., from Cyanobacteria). The Chloroflexus sAC-like cyclases each possess two cyclase catalytic domains and extensive similarity with mammalian enzymes through their carboxy termini. We cloned one of the Chloroflexus sAC-like cyclases and confirmed it to be stimulated by bicarbonate. These data extend the family of organisms possessing bicarbonate-responsive ACs to numerous phyla within the bacterial and eukaryotic kingdoms.

Indexed as

Gene ExpressionAdenylyl CyclasesAmino Acid SequenceAnimalsBacteriaBicarbonatesCloning, MolecularComputational BiologyDatabases, GeneticDictyosteliumDNA PrimersEukaryotic CellsHumansMammalsMolecular Sequence DataPhylogenyAdenylyl CyclasesBicarbonatesDNA Primers

Identifiers

PMID15322879
PMCPMC3644946
OpenAlexW2037239929

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.