Evidence map›Paper›PMID 15322280›Full record

ArticleProtein science : a publication of the Protein Society2004

Structure of the XPC binding domain of hHR23A reveals hydrophobic patches for protein interaction.

Mariusz Kamionka, Juli Feigon

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Protein science : a publication of the Protein Society, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Biomolecular NMR assignments · 2023
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  9. Role of the ubiquitin ligase E6AP/UBE3A in controlling levels of the synaptic protein Arc.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
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  12. Review
  13. Article
  14. Article
  15. Structure of a peptide:N-glycanase-Rad23 complex: insight into the deglycosylation for denatured glycoproteins.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mariusz KamionkaDepartment of Chemistry and Biochemistry, 405 Hilgard Avenue, P.O. Box 951569, University of California, Los Angeles, California 90095-1569, USA.
Juli Feigon
University of California, Los Angeles · US

Funding

STRUCTURE/FUNCTION OF HIV1 VPR ASSOCIATED CELL PROTEINSR01AI043190 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHEN, IRVIN S.Y. · 1998 to 2005
$2.5M
NIAID NIH HHS AI43190NIAID NIH HHS R01 AI043190
6 · The paper itself

Abstract

Rad23 proteins are involved both in the ubiquitin-proteasome pathway and in nucleotide excision repair (NER), but the relationship between these two pathways is not yet understood. The two human homologs of Rad23, hHR23A and B, are functionally redundant in NER and interact with xeroderma pigmentosum complementation group C (XPC) protein. The XPC-hHR23 complex is responsible for the specific recognition of damaged DNA, which is an early step in NER. The interaction of the XPC binding domain (XPCB) of hHR23A/B with XPC protein has been shown to be important for its optimal function in NER. We have determined the solution structure of XPCB of hHR23A. The domain consists of five amphipathic helices and reveals hydrophobic patches on the otherwise highly hydrophilic domain surface. The patches are predicted to be involved in interaction with XPC. The XPCB domain has limited sequence homology with any proteins outside of the Rad23 family except for sacsin, a protein involved in spastic ataxia of Charlevoix-Saguenay, which contains a domain with 35% sequence identity.

Indexed as

Amino Acid SequenceBinding SitesConserved SequenceDNA-Binding ProteinsDNA RepairHeat-Shock ProteinsHumansHydrophobic and Hydrophilic InteractionsMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataProtein ConformationProtein Interaction MappingProtein Structure, TertiarySequence Homology, Amino AcidDNA-Binding ProteinsHeat-Shock ProteinsRad23b protein, mouseSACS protein, humanXPC protein, humanXpc protein, mouse

Identifiers

PMID15322280
PMCPMC2280024
OpenAlexW2065184191

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.