Evidence map›Paper›PMID 15322001›Full record

ArticleInfection and immunity2004

Molecular evolutionary relationships of enteroinvasive Escherichia coli and Shigella spp.

Ruiting Lan, M Chehani Alles, Kathy Donohoe, Marina B Martinez, Peter R Reeves

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 196 citations in OpenAlex.

  1. Article
  2. Review
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  6. Open forum infectious diseases · 2024
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  9. ShigaPass: anMicrobial genomics · 2023
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  10. Toward aInternational journal of molecular sciences · 2023
    Review
  11. The Diversity ofMicroorganisms · 2023
    Review
  12. Are non-lactose-fermentingAccess microbiology · 2023
    Article
  13. Article
  14. Review
  15. Article
  16. ABToxins · 2022
    Review
  17. Historical, current, and emerging tools for identification and serotyping of Shigella.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Review
  18. Cluster-specific gene markers enhanceMicrobial genomics · 2021
    Article
  19. How microbiological tests reflect bacterial pathogenesis and host adaptation.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Review
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ruiting LanSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Australia. r.lan@unsw.edu.au
M Chehani Alles
Kathy Donohoe
Marina B Martinez
Peter R Reeves
University of Sydney · AUUniversidade de São Paulo · BRUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enteroinvasive Escherichia coli (EIEC), a distinctive pathogenic form of E. coli causing dysentery, is similar in many properties to bacteria placed in the four species of Shigella. Shigella has been separated as a genus but in fact comprises several clones of E. coli. The evolutionary relationships of 32 EIEC strains of 12 serotypes have been determined by sequencing of four housekeeping genes and two plasmid genes which were used previously to determine the relationships of Shigella strains. The EIEC strains were grouped in four clusters with one outlier strain, indicating independent derivation of EIEC several times. Three of the four clusters contain more than one O antigen type. One EIEC strain (an O112ac:H- strain) was found in Shigella cluster 3 but is not identical to the Shigella cluster 3 D2 and B15 strains with the same O antigen. Two forms of the virulence plasmid pINV have been identified in Shigella strains by using the sequences of ipgD and mxiA genes, and all but two of our EIEC strains have pINV A. The EIEC strains were grouped in two subclusters with a very low level of variation, generally not intermingled with Shigella pINV A strains. The EIEC clusters based on housekeeping genes were reflected in the plasmid gene sequences, with some exceptions. Two strains were found in the pINV B form by using the ipgD sequence, with one strain having an mxiA sequence similar to the divergent sequence of D1. Clearly, EIEC and Shigella spp. form a pathovar of E. coli.

Indexed as

Evolution, MolecularBacterial ProteinsBase SequenceChromosomes, BacterialDNA, BacterialDysentery, BacillaryEscherichia coliHumansMolecular Sequence DataPhylogenyPlasmidsSequence Analysis, DNASerotypingShigellaBacterial ProteinsDNA, Bacterial

Identifiers

PMID15322001
PMCPMC517479
OpenAlexW2123349167

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.