Evidence map›Paper›PMID 15317783›Full record

ArticleJournal of bacteriology2004

A novel Acetivibrio cellulolyticus anchoring scaffoldin that bears divergent cohesins.

Qi Xu, Yoav Barak, Rina Kenig, Yuval Shoham, Edward A Bayer, Raphael Lamed

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.3field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 45 citations in OpenAlex.

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  16. Structure of CBM3b of the major cellulosomal scaffoldin subunit ScaA from Acetivibrio cellulolyticus.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
  17. Exploration of new geometries in cellulosome-like chimeras.Applied and environmental microbiology · 2007
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Qi XuDepartment of Molecular Microbiology and Biotechnology, Tel-Aviv University, Ramat Aviv, Israel.
Yoav Barak
Rina Kenig
Yuval Shoham
Edward A Bayer
Raphael Lamed
Tel Aviv University · ILAmerican Committee for the Weizmann Institute of Science · USTechnion – Israel Institute of Technology · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sequencing of a cellulosome-integrating gene cluster in Acetivibrio cellulolyticus was completed. The cluster contains four tandem scaffoldin genes (scaA, scaB, scaC, and scaD) bounded upstream and downstream, respectively, by a presumed cellobiose phosphorylase and a nucleotide methylase. The sequences and properties of scaA, scaB, and scaC were reported previously, and those of scaD are reported here. The scaD gene encodes an 852-residue polypeptide that includes a signal peptide, three cohesins, and a C-terminal S-layer homology (SLH) module. The calculated molecular weight of the mature ScaD is 88,960; a 67-residue linker segment separates cohesins 1 and 2, and two approximately 30-residue linkers separate cohesin 2 from 3 and cohesin 3 from the SLH module. The presence of an SLH module in ScaD indicates its role as an anchoring protein. The first two ScaD cohesins can be classified as type II, similar to the four cohesins of ScaB. Surprisingly, the third ScaD cohesin belongs to the type I cohesins, like the seven ScaA cohesins. ScaD is the first scaffoldin to be described that contains divergent types of cohesins as integral parts of the polypeptide chain. The recognition properties among selected recombinant cohesins and dockerins from the different scaffoldins of the gene cluster were investigated by affinity blotting. The results indicated that the divergent types of ScaD cohesins also differ in their preference of dockerins. ScaD thus plays a dual role, both as a primary scaffoldin, capable of direct incorporation of a single dockerin-borne enzyme, and as a secondary scaffoldin that anchors the major primary scaffoldin, ScaA and its complement of enzymes to the cell surface.

Indexed as

Bacterial ProteinsCarrier ProteinsCell Cycle ProteinsCellulosomesChromosomal Proteins, Non-HistoneCohesinsDNA, BacterialEnzymesFungal ProteinsGenes, BacterialGram-Positive Endospore-Forming BacteriaMembrane GlycoproteinsMicroscopy, Electron, ScanningMolecular Sequence DataMolecular WeightMultigene FamilyBacterial ProteinsCarrier ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsDNA, BacterialEnzymesFungal ProteinsMembrane GlycoproteinsNuclear ProteinsProtein Sorting SignalsS-layer proteins

Identifiers

PMID15317783
PMCPMC516847
OpenAlexW2022300563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.