ArticlePlant molecular biology2004
Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling.
Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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Who cites it
44 citing papers in PubMed, 138 citations in OpenAlex.
- Assessment of physio-biochemical assessment and gene expression analysis of sugarcane genotypes under water stress.Molecular biology reports · 2024Article
- Long read transcriptome sequencing of a sugarcane hybrid and its progenitors,Frontiers in plant science · 2023Article
- Overexpression of SugarcaneInternational journal of molecular sciences · 2022Article
- Article
- Applying Molecular Phenotyping Tools to Explore Sugarcane Carbon Potential.Frontiers in plant science · 2021Review
- Identification of genes from the general phenylpropanoid and monolignol-specific metabolism in two sugarcane lignin-contrasting genotypes.Molecular genetics and genomics : MGG · 2020Article
- A genome-wide association study identified loci for yield component traits in sugarcane (Saccharum spp.).PloS one · 2019Article
- Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content.Scientific reports · 2018Article
- Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement.Frontiers in plant science · 2018Review
- Identification, classification and transcriptional profiles of dirigent domain-containing proteins in sugarcane.Molecular genetics and genomics : MGG · 2017Article
- Association of variation in the sugarcane transcriptome with sugar content.BMC genomics · 2017Article
- An integrative overview of the molecular and physiological responses of sugarcane under drought conditions.Plant molecular biology · 2017Article
- Assessment of sucrose transporters, metabolites and sucrose phosphate synthase in different sugarcane tissues.Physiology and molecular biology of plants : an international journal of functional plant biology · 2017Article
- Article
- Expression of Arabidopsis Bax Inhibitor-1 in transgenic sugarcane confers drought tolerance.Plant biotechnology journal · 2016Article
- De novo analysis of transcriptome reveals genes associated with leaf abscission in sugarcane (Saccharum officinarum L.).BMC genomics · 2016Article
- Physiological and transcriptional analyses of developmental stages along sugarcane leaf.BMC plant biology · 2015Article
- Tissue-specific transcriptome analysis within the maturing sugarcane stalk reveals spatial regulation in the expression of cellulose synthase and sucrose transporter gene families.Plant molecular biology · 2015Article
- Potential for Genetic Improvement of Sugarcane as a Source of Biomass for Biofuels.Frontiers in bioengineering and biotechnology · 2015Review
- Large-Scale Transcriptome Analysis of Two Sugarcane Genotypes Contrasting for Lignin Content.PloS one · 2015Article
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sugarcane accumulates high concentrations of sucrose in the mature stem and a number of physiological processes on-going in maturing stem tissue both directly and indirectly allow this process. To identify transcripts that are associated with stem maturation, we compared patterns of gene expression in maturing and immature stem tissue by expression profiling and bioinformatic analysis of sets of stem ESTs. This study complements a previous study of gene expression associated directly with sugar metabolism in sugarcane. A survey of sequences derived from stem tissue identified an abundance of several classes of sequence that are associated with fibre biosynthesis in the maturing stem. A combination of EST analyses and microarray hybridization revealed that genes encoding homologues of the dirigent protein, a protein that assists in the stereospecificity of lignin assembly, were the most abundant and most strongly differentially expressed transcripts in maturing stem tissue. There was also evidence of coordinated expression of other categories of fibre biosynthesis and putative defence- and stress-related transcripts in the maturing stem. This study has demonstrated the utility of genomic approaches using large-scale EST acquisition and microarray hybridization techniques to highlight the very significant transcriptional investment the maturing stem of sugarcane has placed in fibre biosynthesis and stress tolerance, in addition to its already well-documented role in sugar accumulation.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.