Evidence map›Paper›PMID 15316277›Full record

ReviewGlycoconjugate journal2004

Genetic organization of chromosomal S-layer glycan biosynthesis loci of Bacillaceae.

René Novotny, Andreas Pfoestl, Paul Messner, Christina Schäffer

Abstract readReview
PubMed Publisher
In one paragraph

Review in Glycoconjugate journal, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. S-layers: principles and applications.FEMS microbiology reviews · 2014
    Article
  5. Bacterial cell-envelope glycoconjugates.Advances in carbohydrate chemistry and biochemistry · 2013
    Review
  6. Article
  7. The s-layer glycome-adding to the sugar coat of bacteria.International journal of microbiology · 2011
    Article
  8. ABC transporters involved in export of cell surface glycoconjugates.Microbiology and molecular biology reviews : MMBR · 2010
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. S-layer nanoglycobiology of bacteria.Carbohydrate research · 2008
    Review
  14. Article
  15. Article
  16. Horizontal gene transfer in chromalveolates.BMC evolutionary biology · 2007
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

René NovotnyUniversity of Applied Life Sciences and Natural Resources, Center for NanoBiotechnology, Gregor-Mendel Strasse 33, A-1180 Wien, Austria.
Andreas Pfoestl
Paul Messner
Christina Schäffer
BOKU University · ATGregor Mendel Institute of Molecular Plant Biology · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

S-layer glycoproteins are cell surface glycoconjugates that have been identified in archaea and in bacteria. Usually, S-layer glycoproteins assemble into regular, crystalline arrays covering the entire bacterium. Our research focuses on thermophilic Bacillaceae, which are considered a suitable model system for studying bacterial glycosylation. During the past decade, investigations of S-layer glycoproteins dealt with the elucidation of the highly variable glycan structures by a combination of chemical degradation methods and nuclear magnetic resonance spectroscopy. It was only recently that the molecular characterization of the genes governing the formation of the S-layer glycoprotein glycan chains has been initiated. The S-layer glycosylation (slg) gene clusters of four of the 11 known S-layer glycan structures from members of the Bacillaceae have now been studied. The clusters are approximately 16 to approximately 25 kb in size and transcribed as polycistronic units. They include nucleotide sugar pathway genes that are arranged as operons, sugar transferase genes, glycan processing genes, and transporter genes. So far, the biochemical functions only of the genes required for nucleotide sugar biosynthesis have been demonstrated experimentally. The presence of insertion sequences and the decrease of the G + C content at the slg locus suggest that the investigated organisms have acquired their specific S-layer glycosylation potential by lateral gene transfer. In addition, S-layer protein glycosylation requires the participation of housekeeping genes that map outside the cluster. The gene encoding the respective S-layer target protein is transcribed monocistronically and independently of the slg cluster genes. Its chromosomal location is not necessarily in close vicinity to the slg gene cluster.

Indexed as

BacillaceaeBacterial ProteinsChromosomes, BacterialGlycosylationMembrane GlycoproteinsPolysaccharides, BacterialBacterial ProteinsMembrane GlycoproteinsPolysaccharides, BacterialS-layer proteins

Identifiers

PMID15316277
OpenAlexW1972422751

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.