Evidence map›Paper›PMID 15314240›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Binding between the Niemann-Pick C1 protein and a photoactivatable cholesterol analog requires a functional sterol-sensing domain.

Nobutaka Ohgami, Dennis C Ko, Matthew Thomas, Matthew P Scott, Catherine C Y Chang, Ta-Yuan Chang

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed, 1 pooled it
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 1 synthesis or guideline pooled it, 203 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. PI(4,5)PAdvances in experimental medicine and biology · 2023
    Article
  4. Profile of Ta-Yuan Chang.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nobutaka OhgamiDepartment of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA.
Dennis C Ko
Matthew Thomas
Matthew P Scott
Catherine C Y Chang
Ta-Yuan Chang
Stanford University · US

Funding

CELL MUTANTS DEFECTIVE IN CHOLESTEROL ESTER FORMATIONR01HL036709 · NHLBI · DARTMOUTH COLLEGE · PI CHANG, TA YUAN · 1986 to 2012
$3.9M
CELL MUTANTS DEFECTIVE IN CHOLESTEROL ESTER FORMATIONR37HL036709 · NHLBI · DARTMOUTH COLLEGE · PI CHANG, TA-YUAN · 1994 to 2003
$1.4M
Howard Hughes Medical InstituteNHLBI NIH HHS R01 HL036709NHLBI NIH HHS R37 HL036709
6 · The paper itself

Abstract

Niemann-Pick type C (NPC) 1 protein plays important roles in moving cholesterol and other lipids out of late endosomes by means of vesicular trafficking, but it is not known whether NPC1 directly interacts with cholesterol. We performed photoaffinity labeling of intact cells expressing fluorescent protein (FP)-tagged NPC1 by using [(3)H]7,7-azocholestanol ([(3)H]AC). After immunoprecipitation, (3)H-labeled NPC1-GFP appeared as a single band. Including excess unlabeled sterol to the labeling reaction significantly diminished the labeling. Altering the NPC1 sterol-sensing domain (SSD) with loss-of-function mutations (P692S and Y635C) severely reduced the extent of labeling. To further demonstrate the specificity of labeling, we show that NPC2, a late endosomal/lysosomal protein that binds to cholesterol with high affinity, is labeled, whereas mutant NPC2 proteins inactive in binding cholesterol are not. Vamp7, an abundant late endosomal membrane protein without an SSD but with one transmembrane domain, cannot be labeled. Binding between [(3)H]AC and NPC1 does not require NPC2. Treating cells with either U-18666A, a compound that creates an NPC-like phenotype, or with bafilomycin A1, a compound that raises late endosomal pH, has no effect on labeling of NPC1-YFP, suggesting that both drugs affect processes other than NPC1 binding to cholesterol. We also developed a procedure to label the NPC1-YFP by [(3)H]AC in vitro and showed that cholesterol is more effective in protection against labeling than its analogs epicholesterol or 5-alpha-cholestan. Overall, the results demonstrate that there is direct binding between NPC1 and azocholestanol; the binding does not require NPC2 but requires a functional SSD within NPC1.

Indexed as

AnimalsAzo CompoundsCarrier ProteinsCell LineCell MembraneCholestanolCholesterolGlycoproteinsHumansIntracellular Signaling Peptides and ProteinsLightLuminescent ProteinsMembrane GlycoproteinsMolecular StructureNiemann-Pick C1 ProteinNiemann-Pick Diseases7,7-azocholestanolAzo CompoundsCarrier ProteinsCholestanolCholesterolGlycoproteinsIntracellular Signaling Peptides and ProteinsLuminescent ProteinsMembrane GlycoproteinsNiemann-Pick C1 ProteinNPC1 protein, humanNPC2 protein, humanPhotoaffinity LabelsRecombinant Fusion ProteinsVesicular Transport Proteins

Identifiers

PMID15314240
PMCPMC514655
OpenAlexW2044272444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.