Evidence map›Paper›PMID 15310827›Full record

ArticlePlant physiology2004

Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor.

Hyeong Cheol Park, Man Lyang Kim, Yun Hwan Kang, Joo Mi Jeon, Jae Hyuk Yoo, Min Chul Kim, Chan Young Park, Jae Cheol Jeong, Byeong Cheol Moon, Ju Huck Lee and 7 more

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 173 papers.

0numbers the graph read from it
0cells of the map it votes in
173citing papers in PubMed
9.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

173 citing papers in PubMed, 421 citations in OpenAlex.

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113 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Hyeong Cheol ParkDivision of Applied Life Science (BK21 Program), Environmental Biotechnology Research Center and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju 660-701, Korea.
Man Lyang Kim
Yun Hwan Kang
Joo Mi Jeon
Jae Hyuk Yoo
Min Chul Kim
Chan Young Park
Jae Cheol Jeong
Byeong Cheol Moon
Ju Huck Lee
Hae Won Yoon
Sung-Ho Lee
Woo Sik Chung
Chae Oh Lim
Sang Yeol Lee
Jong Chan Hong
Moo Je Cho
Gyeongsang National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ca(2+)-binding protein calmodulin mediates cellular Ca(2+) signals in response to a wide array of stimuli in higher eukaryotes. Plants express numerous CaM isoforms. Transcription of one soybean (Glycine max) CaM isoform, SCaM-4, is dramatically induced within 30 min of pathogen or NaCl stresses. To characterize the cis-acting element(s) of this gene, we isolated an approximately 2-kb promoter sequence of the gene. Deletion analysis of the promoter revealed that a 130-bp region located between nucleotide positions -858 and -728 is required for the stressors to induce expression of SCaM-4. A hexameric DNA sequence within this region, GAAAAA (GT-1 cis-element), was identified as a core cis-acting element for the induction of the SCaM-4 gene. The GT-1 cis-element interacts with an Arabidopsis GT-1-like transcription factor, AtGT-3b, in vitro and in a yeast selection system. Transcription of AtGT-3b is also rapidly induced within 30 min after pathogen and NaCl treatment. These results suggest that an interaction between a GT-1 cis-element and a GT-1-like transcription factor plays a role in pathogen- and salt-induced SCaM-4 gene expression in both soybean and Arabidopsis.

Indexed as

Amino Acid SequenceBase SequenceCalcium-Binding ProteinsDNA PrimersGene DeletionGlycine maxMolecular Sequence DataPlant ProteinsPromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionRNA, PlantSequence AlignmentSequence Homology, Amino AcidTranscription FactorsCalcium-Binding ProteinsDNA PrimersPlant ProteinsRNA, PlantTranscription Factors

Identifiers

PMID15310827
PMCPMC520786
OpenAlexW2160973013

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.