Evidence map›Paper›PMID 15309682›Full record

ArticleJournal of human genetics2004

Characterization of a new PEPD allele causing prolidase deficiency in two unrelated patients: natural-occurrent mutations as a tool to investigate structure-function relationship.

Anna Lupi, Antonio De Riso, Sara Della Torre, Antonio Rossi, Elena Campari, Laura Vilarinho, Giuseppe Cetta, Antonella Forlino

Open access · bronzeAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of human genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Anna LupiDepartment of Biochemistry, Section of Medicine and Pharmacology, University of Pavia, Pavia, Italy.
Antonio De RisoDepartment of Biochemistry, Section of Medicine and Pharmacology, University of Pavia, Pavia, Italy.
Sara Della TorreDepartment of Biochemistry, Section of Medicine and Pharmacology, University of Pavia, Pavia, Italy.
Antonio RossiDepartment of Biochemistry, Section of Medicine and Pharmacology, University of Pavia, Pavia, Italy.
Elena CampariDepartment of Biochemistry, Section of Medicine and Pharmacology, University of Pavia, Pavia, Italy.
Laura VilarinhoDepartment of Clinical Biology, Medical Genetics Institute, Praca Pedro Nunes, Porto, Portugal.
Giuseppe CettaDepartment of Biochemistry, Section of Medicine and Pharmacology, University of Pavia, Pavia, Italy.
Antonella ForlinoDepartment of Biochemistry, Section of Medicine and Pharmacology, University of Pavia, Pavia, Italy. aforlino@unipv.it.
University of Pavia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prolidase deficiency (PD) is a rare autosomal recessive disorder characterized mainly by skin lesions of the legs and feet, mental retardation, and respiratory infections. Mutations at the PEPD locus, located on chromosome 19, are responsible for this disease. We identified a new PEPD allele in two unrelated Portuguese PD patients by analyses of reverse transcribed PCR-amplified cDNA. We used SSCP analysis of seven overlapping fragments spanning the entire coding region of the gene and detected abnormal SSCP bands in two of them: PD3 (nt 425-743) and PD4 (nt 661-973). Direct sequencing of the mutant cDNA and genomic DNA revealed a new homozygous 3-bp deletion (Y231del) in both cases. Transient expression in PD fibroblasts of wild-type and mutant prolidase cDNA confirmed reduced activity of the construct carrying the 3-bp deletion. The mutation results in a loss of prolidase activity in skin fibroblasts. Intracellular accumulation of Gly-Pro dipeptide in long-term cultured fibroblasts was detected by capillary electrophoresis. The mutation falls in the alpha2 domain of the "pita bread" structure proposed for E. coli and human prolidase by Bazan et al. on the bases of their sequence homology with E. coli methionine aminopeptidase. Taking into account the effects of the described mutations on stability and activity of the enzyme, we propose the identification of three different functional regions.

Indexed as

AllelesBase SequenceBlotting, NorthernChromosomes, Human, Pair 19DipeptidasesDNA, ComplementaryDNA PrimersElectrophoresis, CapillaryFibroblastsGenes, RecessiveHumansMolecular Sequence DataMutationPeptidesPlasmidsPolymorphism, Single-Stranded ConformationalDipeptidasesDNA, ComplementaryDNA PrimersPeptidesproline dipeptidase

Identifiers

PMID15309682
OpenAlexW2128240518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.