Evidence map›Paper›PMID 15308720›Full record

ArticleJournal of virology2004

Unique features of hepatitis C virus capsid formation revealed by de novo cell-free assembly.

Kevin C Klein, Stephen J Polyak, Jaisri R Lingappa

Abstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Synthesis and Assembly of Hepatitis B Virus-Like Particles in aFrontiers in bioengineering and biotechnology · 2020
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Host-rabies virus protein-protein interactions as druggable antiviral targets.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Virion assembly and release.Current topics in microbiology and immunology · 2013
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Assembly of immature HIV-1 capsids using a cell-free system.Methods in molecular biology (Clifton, N.J.) · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kevin C KleinDepartment of Pathobiology, University of Washington, Seattle, Washington 98195, USA.
Stephen J Polyak
Jaisri R Lingappa

Funding

VIRAL ONCOLOGYT32CA009229 · NCI · UNIVERSITY OF WASHINGTON · PI LINIAL, MAXINE L · 1985 to 2007
$3.0M
Hepatitis C Virus Induced IL-8 &Inhibition of InterferonR01DK062187 · NIDDK · UNIVERSITY OF WASHINGTON · PI POLYAK, STEPHEN J. · 2003 to 2007
$1.4M
Hepatitis C Virus Proteins and EthanolR21AA013301 · NIAAA · UNIVERSITY OF WASHINGTON · PI POLYAK, STEPHEN J. · 2002 to 2004
$455k
NCI NIH HHS T32 CA009229NCI NIH HHS T32 CA09229NIAAA NIH HHS AA13301NIAAA NIH HHS R21 AA013301NIDDK NIH HHS DK62187NIDDK NIH HHS R01 DK062187
6 · The paper itself

Abstract

The assembly of hepatitis C virus (HCV) is poorly understood, largely due to the lack of mammalian cell culture systems that are easily manipulated and produce high titers of virus. This problem is highlighted by the inability of the recently established HCV replicon systems to support HCV capsid assembly despite high levels of structural protein synthesis. Here we demonstrate that up to 80% of HCV core protein synthesized de novo in cell-free systems containing rabbit reticulocyte lysate or wheat germ extracts assembles into HCV capsids. This contrasts with standard primate cell culture systems, in which almost no core assembles into capsids. Cell-free HCV capsids, which have a sedimentation value of approximately 100S, have a buoyant density (1.28 g/ml) on cesium chloride similar to that of HCV capsids from other systems. Capsids produced in cell-free systems are also indistinguishable from capsids isolated from HCV-infected patient serum when analyzed by transmission electron microscopy. Using these cell-free systems, we show that HCV capsid assembly is independent of signal sequence cleavage, is dependent on the N terminus but not the C terminus of HCV core, proceeds at very low nascent chain concentrations, is independent of intact membrane surfaces, and is partially inhibited by cultured liver cell lysates. By allowing reproducible and quantitative assessment of viral and cellular requirements for capsid formation, these cell-free systems make a mechanistic dissection of HCV capsid assembly possible.

Indexed as

Virus AssemblyAnimalsBloodCapsidCapsid ProteinsCell ExtractsCell-Free SystemCell LineCentrifugation, Density GradientHepacivirusHumansKineticsMammalsProtein BiosynthesisRabbitsTriticumCapsid ProteinsCell Extractsnucleocapsid protein, Hepatitis C virusViral Core Proteins

Identifiers

PMID15308720
PMCPMC506955

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.