Evidence map›Paper›PMID 15301688›Full record

ArticleMolecular cancer2004

Aberrant CBFA2T3B gene promoter methylation in breast tumors.

Anthony J Bais, Alison E Gardner, Olivia L D McKenzie, David F Callen, Grant R Sutherland, Gabriel Kremmidiotis

Open access · goldAbstract read
In one paragraph

Article in Molecular cancer, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Anthony J BaisBionomics Limited, Thebarton, Adelaide, SA 5031, Australia. abais@bionomics.com.au
Alison E Gardner
Olivia L D McKenzie
David F Callen
Grant R Sutherland
Gabriel Kremmidiotis
Women's and Children's Hospital · AUBionomics (Australia) · AUHanson Institute · AUUniversity of Adelaide · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe CBFA2T3 locus located on the human chromosome region 16q24.3 is frequently deleted in breast tumors. CBFA2T3 gene expression levels are aberrant in breast tumor cell lines and the CBFA2T3B isoform is a potential tumor suppressor gene. In the absence of identified mutations to further support a role for this gene in tumorigenesis, we explored whether the CBFA2T3B promoter region is aberrantly methylated and whether this correlates with expression.

resultsAberrant hypo and hypermethylation of the CBFA2T3B promoter was detected in breast tumor cell lines and primary breast tumor samples relative to methylation index interquartile ranges in normal breast counterpart and normal whole blood samples. A statistically significant inverse correlation between aberrant CBFA2T3B promoter methylation and gene expression was established.

conclusionCBFA2T3B is a potential breast tumor suppressor gene affected by aberrant promoter methylation and gene expression. The methylation levels were quantitated using a second-round real-time methylation-specific PCR assay. The detection of both hypo and hypermethylation is a technicality regarding the methylation methodology.

Indexed as

Breast NeoplasmsCell Line, TumorDNA, NeoplasmGene Expression RegulationGene Expression Regulation, NeoplasticHumansMethylationPhosphoproteinsPromoter Regions, GeneticProtein SubunitsRepressor ProteinsSequence Analysis, DNASulfitesTumor Suppressor ProteinsCBFA2T3 protein, humanDNA, Neoplasmhydrogen sulfitePhosphoproteinsProtein SubunitsRepressor ProteinsSulfitesTumor Suppressor Proteins

Identifiers

PMID15301688
PMCPMC516017
OpenAlexW2143243086

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.