Evidence map›Paper›PMID 15297492›Full record

ArticleJournal of clinical microbiology2004

Alanine-threonine polymorphism of Helicobacter pylori RpoB is correlated with differential induction of interleukin-8 in MKN45 cells.

Keun-Hwa Lee, Myung-Je Cho, Yoshio Yamaoka, David Y Graham, Yeo-Jun Yun, So-Yon Woo, Chang-Young Lim, Kwan-Soo Ko, Bum-Joon Kim, Hyun-Chae Jung and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Keun-Hwa LeeDepartment of Microbiology and Cancer Research Institute, Institute of Endemic Diseases, Seoul National University College of Medicine, 28 Yongon-dong, Chongno-gu, Seoul, 110-799, Korea.
Myung-Je Cho
Yoshio Yamaoka
David Y Graham
Yeo-Jun Yun
So-Yon Woo
Chang-Young Lim
Kwan-Soo Ko
Bum-Joon Kim
Hyun-Chae Jung
Woo-Kon Lee
Kwang-Ho Rhee
Yoon-Hoh Kook
New Generation University College · ETSeoul National University Hospital · KRBaylor College of Medicine · USHansol Chemical (South Korea) · KRSeoul National University · KR

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
NIDDK NIH HHS DK56338NIDDK NIH HHS P30 DK056338
6 · The paper itself

Abstract

Geographical differences in the genetic diversity of Helicobacter pylori isolates were examined by analyzing rpoB sequences. An extremely high level of allelic diversity among H. pylori strains was found. The rpoB sequences of Asian and non-Asian (North and South American, European, and South African) strains were found to differ. An amino acid polymorphism (alanine and threonine RpoB types) was found at the 497th residue by deduced amino acid analysis. RpoB with a threonine residue (RpoB(Thr)) was uniquely present in East Asian countries, and two-thirds of the H. pylori isolate population in this region was RpoB(Thr); however, this type was rare or absent in Western countries, where RpoB(Ala) predominated. RpoB(Thr) strains induced a much larger amount of interleukin-8, a chemokine that plays an important role in chronic inflammation, than RpoB(Ala) strains in cultured MKN45 cells.

Indexed as

AlanineThreonineAmino Acid SubstitutionAnimalsBase SequenceCell LineCoculture TechniquesDNA, BacterialDNA-Directed RNA PolymerasesDNA PrimersGeographyHelicobacter pyloriInterleukin-8PhylogenyPolymerase Chain ReactionAlanineDNA, BacterialDNA-Directed RNA PolymerasesDNA PrimersInterleukin-8RNA polymerase beta subunitThreonine

Identifiers

PMID15297492
PMCPMC497570
OpenAlexW2102531505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.