Evidence map›Paper›PMID 15294834›Full record

ArticleApplied and environmental microbiology2004

Differential gene expression to investigate the effect of (5Z)-4-bromo- 5-(bromomethylene)-3-butyl-2(5H)-furanone on Bacillus subtilis.

Dacheng Ren, Laura A Bedzyk, Peter Setlow, Dacre F England, Staffan Kjelleberg, Stuart M Thomas, Rick W Ye, Thomas K Wood

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 55 citations in OpenAlex.

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  14. Cross-kingdom signalling: exploitation of bacterial quorum sensing molecules by the green seaweed Ulva.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2007
    Review
  15. Article
  16. Article
  17. Time-Dependent Toxicities of Quorum Sensing Inhibitors toDose-response : a publication of International Hormesis Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Dacheng RenDepartment of Chemical Engineering, University of Connecticut, 191 Auditorium Rd., U-3222, Storrs, CT 06269-3222, USA.
Laura A Bedzyk
Peter Setlow
Dacre F England
Staffan Kjelleberg
Stuart M Thomas
Rick W Ye
Thomas K Wood
University of Connecticut · USUNSW Sydney · AUDuPont (United States) · USExperimental Station · USUConn Health · USWilmington University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

(5Z)-4-Bromo-5-(bromomethylene)-3-butyl-2(5H)-furanone (furanone) from the red marine alga Delisea pulchra was found previously to inhibit the growth, swarming, and biofilm formation of gram-positive bacteria. Using the gram-positive bacterium Bacillus subtilis as a test organism, we observed cell killing by 20 microg of furanone per ml, while 5 microg of furanone per ml inhibited growth approximately twofold without killing the cells. To discover the mechanism of this inhibition on a genetic level and to investigate furanone as a novel antibiotic, full-genome DNA microarrays were used to analyze the gene expression profiles of B. subtilis grown with and without 5 microg of furanone per ml. This agent induced 92 genes more than fivefold (P < 0.05) and repressed 15 genes more than fivefold (P < 0.05). The induced genes include genes involved in stress responses (such as the class III heat shock genes clpC, clpE, and ctsR and the class I heat shock genes groES, but no class II or IV heat shock genes), fatty acid biosynthesis, lichenan degradation, transport, and metabolism, as well as 59 genes with unknown functions. The microarray results for four genes were confirmed by RNA dot blotting. Mutation of a stress response gene, clpC, caused B. subtilis to be much more sensitive to 5 microg of furanone per ml (there was no growth in 8 h, while the wild-type strain grew to the stationary phase in 8 h) and confirmed the importance of the induction of this gene as identified by the microarray analysis.

Indexed as

Gene Expression Regulation, BacterialAnti-Bacterial AgentsBacillus subtilisBacterial ProteinsCulture MediaFuransGene Expression ProfilingMicroscopy, ConfocalOligonucleotide Array Sequence Analysis4-bromo-5-(bromomethylene)-3-butyl-2(5H)-furanoneAnti-Bacterial AgentsBacterial ProteinsCulture MediaFurans

Identifiers

PMID15294834
PMCPMC492336
OpenAlexW2136499912

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.