Evidence map›Paper›PMID 15284492›Full record

ArticlePlant molecular biology2004

Members of a new group of chitinase-like genes are expressed preferentially in cotton cells with secondary walls.

Deshui Zhang, Maria Hrmova, Chun-Hua Wan, Chunfa Wu, Jace Balzen, Wendy Cai, Jing Wang, Llewellyn D Densmore, Geoffrey B Fincher, Hong Zhang and 1 more

Abstract read
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In one paragraph

Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 80 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Deshui ZhangDepartment of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA.
Maria Hrmova
Chun-Hua Wan
Chunfa Wu
Jace Balzen
Wendy Cai
Jing Wang
Llewellyn D Densmore
Geoffrey B Fincher
Hong Zhang
Candace H Haigler
Texas Tech University · USAustralian Centre for Plant Functional Genomics · AUID Genomics (United States) · USTexas Tech University Health Sciences Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two homologous cotton (Gossypium hirsutum L.) genes, GhCTL1 and GhCTL2, encode members of a new group of chitinase-like proteins (called the GhCTL group) that includes other proteins from two cotton species, Arabidopsis, rice, and pea. Members of the GhCTL group are assigned to family GH19 glycoside hydrolases along with numerous authentic chitinases (http://afmb.cnrs-mrs.fr/CAZY/index.html), but the proteins have novel consensus sequences in two regions that are essential for chitinase activity and that were previously thought to be conserved. Maximum parsimony phylogenetic analyses, as well as Neighbor-Joining distance analyses, of numerous chitinases confirmed that the GhCTL group is distinct. A molecular model of GhCTL2 (based on the three-dimensional structure of a barley chitinase) had changes in the catalytic site that are likely to abolish catalytic activity while retaining potential to bind chitin oligosaccharides. RNA blot analysis showed that members of the GhCTL group had preferential expression during secondary wall deposition in cotton lint fiber. Cotton transformed with a fusion of the GhCTL2 promoter to the beta -d-glucuronidase gene showed preferential reporter gene activity in numerous cells during secondary wall deposition. Together with evidence from other researchers that mutants in an Arabidopsis gene within the GhCTL group are cellulose-deficient with phenotypes indicative of altered primary cell walls, these data suggest that members of the GhCTL group of chitinase-like proteins are essential for cellulose synthesis in primary and secondary cell walls. However, the mechanism by which they act is more likely to involve binding of chitin oligosaccharides than catalysis.

Indexed as

Gene Expression ProfilingAmino Acid SequenceBlotting, NorthernCell WallChitinasesDNA, ComplementaryDNA, PlantGene Expression Regulation, PlantGlucuronidaseGossypiumModels, MolecularMolecular ConformationMolecular Sequence DataMultigene FamilyPhylogenyPlant ProteinsChitinasesCTL1 protein, Gossypium hirsutumCTL2 protein, Gossypium hirsutumDNA, ComplementaryDNA, PlantGlucuronidasePlant ProteinsRecombinant Fusion ProteinsRNA, Plant

Identifiers

PMID15284492
OpenAlexW2063239105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.