Evidence map›Paper›PMID 15280548›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Pauling and Corey's alpha-pleated sheet structure may define the prefibrillar amyloidogenic intermediate in amyloid disease.

Roger S Armen, Mari L DeMarco, Darwin O V Alonso, Valerie Daggett

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 136 citations in OpenAlex.

  1. Article
  2. Article
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  5. Article
  6. SOBA: Development and testing of a soluble oligomer binding assay for detection of amyloidogenic toxic oligomers.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Review
  8. Review
  9. Microsecond Backbone Motions Modulate the Oligomerization of the DNAJB6 Chaperone.Angewandte Chemie (International ed. in English) · 2022
    Article
  10. Microsecond Backbone Motions Modulate the Oligomerization of the DNAJB6 Chaperone.Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  11. Fibulin-4 Accelerates Amyloid Formation by Binding with a Keratin 5 Peptide Fragment.JID innovations : skin science from molecules to population health · 2022
    Article
  12. Metals in ALS TDP-43 Pathology.International journal of molecular sciences · 2021
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. α-Sheet secondary structure in amyloid β-peptide drives aggregation and toxicity in Alzheimer's disease.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Roger S ArmenDepartment of Medicinal Chemistry and Biomolecular Structure and Design Program, University of Washington, Seattle, WA 98195-7610, USA.
Mari L DeMarco
Darwin O V Alonso
Valerie Daggett
University of Washington · US

Funding

Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
MOLECULAR DYNAMICS SIMULATIONS OF PROTEIN UNFOLDINGR01GM050789 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAGGETT, VALERIE D · 2000 to 2014
$3.9M
NIGMS NIH HHS R01 GM050789NIGMS NIH HHS R01 GM 50789NIGMS NIH HHS T32 GM007750NIGMS NIH HHS T32 GM008268NIGMS NIH HHS T32 GM07750NIGMS NIH HHS T32 GM 08268
6 · The paper itself

Abstract

Transthyretin, beta(2)-microglobulin, lysozyme, and the prion protein are four of the best-characterized proteins implicated in amyloid disease. Upon partial acid denaturation, these proteins undergo conformational change into an amyloidogenic intermediate that can self-assemble into amyloid fibrils. Many experiments have shown that pH-mediated changes in structure are required for the formation of the amyloidogeneic intermediate, but it has proved impossible to characterize these conformational changes at high resolution using experimental means. To probe these conformational changes at atomic resolution, we have performed molecular dynamics simulations of these proteins at neutral and low pH. In low-pH simulations of all four proteins, we observe the formation of alpha-pleated sheet secondary structure, which was first proposed by L. Pauling and R. B. Corey [(1951) Proc. Natl. Acad. Sci. USA 37, 251-256]. In all beta-sheet proteins, transthyretin and beta(2)-microglobulin, alpha-pleated sheet structure formed over the strands that are highly protected in hydrogen-exchange experiments probing amyloidogenic conditions. In lysozyme and the prion protein, alpha-sheets formed in the specific regions of the protein implicated in the amyloidogenic conversion. We propose that the formation of alpha-pleated sheet structure may be a common conformational transition in amyloidosis.

Indexed as

Protein Structure, SecondaryAmyloidAmyloid beta-Peptidesbeta 2-MicroglobulinComputer SimulationDimerizationHumansHydrogen-Ion ConcentrationModels, MolecularMuramidasePrealbuminProtein ConformationProtein DenaturationAmyloidAmyloid beta-Peptidesbeta 2-MicroglobulinMuramidasePrealbumin

Identifiers

PMID15280548
PMCPMC511030
OpenAlexW2101817300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.