Evidence map›Paper›PMID 15280459›Full record

ArticleJournal of virology2004

Analysis of integration sites of Jaagsiekte sheep retrovirus in ovine pulmonary adenocarcinoma.

Christina Cousens, Jeanette V Bishop, Adrian W Philbey, Clare A Gill, Massimo Palmarini, Jonathan O Carlson, James C DeMartini, J Michael Sharp

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Lentiviral integration preferences in transgenic mice.Genesis (New York, N.Y. : 2000) · 2008
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Update of research and management of hepatitis B.Journal of gastroenterology · 2006
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Christina CousensMoredun Research Institute, Pentlands Science Park, Bush Loan, Edinburgh EH26 0PZ, United Kingdom. cousc@mri.sari.ac.uk
Jeanette V Bishop
Adrian W Philbey
Clare A Gill
Massimo Palmarini
Jonathan O Carlson
James C DeMartini
J Michael Sharp
Colorado State University · USMoredun Research Institute · GBTexas A&M University · USUniversity of Georgia · US

Funding

Oncogenesis In Retrovirus-Induced Lung CancerR01CA095706 · NCI · UNIVERSITY OF GEORGIA (UGA) · PI PALMARINI, MASSIMO · 2002 to 2005
$1.2M
TYPE D RETROVIRUS AND PULMONARY CARCINOMAR01CA059116 · NCI · COLORADO STATE UNIVERSITY-FORT COLLINS · PI DEMARTINI, JAMES C · 1993 to 2001
$611k
NCI NIH HHS CA59116NCI NIH HHS CA95706NCI NIH HHS R01 CA095706
6 · The paper itself

Abstract

Ovine pulmonary adenocarcinoma (OPA) is an infectious lung tumor of sheep caused by Jaagsiekte sheep retrovirus (JSRV). To test the hypothesis that JSRV insertional mutagenesis is involved in the oncogenesis of OPA, we cloned and characterized 70 independent integration sites from 23 cases of OPA. Multiple integration sites were identified in most tumors. BLAST analysis of the sequences did not disclose any potential oncogenic motifs or any identical integration sites in different tumors. Thirty-seven of the integration sites were mapped to individual chromosomes by PCR with a panel of sheep-hamster hybrid cell lines. Integration sites were found on 20 of the 28 sheep chromosomes, suggesting a random distribution. However, four integration sites from four different tumors mapped to chromosome 16. By Southern blot hybridization, probes derived from two of these sites mapped to within 5 kb of each other on normal sheep DNA. These sites were found within a single sheep bacterial artificial chromosome clone and were further mapped to only 2.5 kb apart, within an uncharacterized predicted gene and less than 200 kb from a mitogen-activated protein kinase-encoding gene. These findings suggest that there is at least one common integration site for JSRV in OPA and add weight to the hypothesis that insertional mutagenesis is involved in the development of this tumor.

Indexed as

Virus IntegrationAnimalsCell LineChromosome MappingChromosomesCricetinaeDNA, ViralHybrid CellsJaagsiekte sheep retrovirusMolecular Sequence DataMutagenesis, InsertionalPulmonary Adenomatosis, OvineSequence Analysis, DNASheepDNA, Viral

Identifiers

PMID15280459
PMCPMC479065
OpenAlexW2133819228

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.