Evidence map›Paper›PMID 15280420›Full record

ArticleThe Journal of experimental medicine2004

Deletion of the nucleotide excision repair gene Ercc1 reduces immunoglobulin class switching and alters mutations near switch recombination junctions.

Carol E Schrader, Joycelyn Vardo, Erin Linehan, Michael Z Twarog, Laura J Niedernhofer, Jan H J Hoeijmakers, Janet Stavnezer

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 40 citations in OpenAlex.

  1. Antibody Deficiency in Xeroderma Pigmentosum.Journal of clinical immunology · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Frontiers in oncology · 2019
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Inducible DNA breaks in Ig S regions are dependent on AID and UNG.The Journal of experimental medicine · 2005
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Carol E SchraderDepartment of Molecular Genetics and Microbiology, University of Massachusetts Medical School, 55 Lake Ave. North, Worcester, MA 01655, USA.
Joycelyn Vardo
Erin Linehan
Michael Z Twarog
Laura J Niedernhofer
Jan H J Hoeijmakers
Janet Stavnezer
University of Massachusetts Chan Medical School · US

Funding

MOLECULAR BASIS OF IMMUNOGLOBULIN HEAVY CHAIN SWITCHR01AI023283 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHRADER, CAROL E · 1985 to 2014
$5.8M
NIAID NIH HHS AI23283NIAID NIH HHS R01 AI023283
6 · The paper itself

Abstract

The structure-specific endonuclease ERCC1-XPF is an essential component of the nucleotide excision DNA repair pathway. ERCC1-XPF nicks double-stranded DNA immediately adjacent to 3' single-strand regions. Substrates include DNA bubbles and flaps. Furthermore, ERCC1 interacts with Msh2, a mismatch repair (MMR) protein involved in class switch recombination (CSR). Therefore, ERCC1-XPF has abilities that might be useful for antibody CSR. We tested whether ERCC1 is involved in CSR and found that Ercc1(-)(/)(-) splenic B cells show moderately reduced CSR in vitro, demonstrating that ERCC1-XPF participates in, but is not required for, CSR. To investigate the role of ERCC1 in CSR, the nucleotide sequences of switch (S) regions were determined. The mutation frequency in germline Smicro segments and recombined Smicro-Sgamma3 segments cloned from Ercc1(-)(/)(-) splenic B cells induced to switch in culture was identical to that of wild-type (WT) littermates. However, Ercc1(-)(/)(-) cells show increased targeting of the mutations to G:C bp in RGYW/WRCY hotspots and mutations occur at sites more distant from the S-S junctions compared with WT mice. The results indicate that ERCC1 is not epistatic with MMR and suggest that ERCC1 might be involved in processing or repair of DNA lesions in S regions during CSR.

Indexed as

Immunoglobulin Class SwitchingRecombination, GeneticAnimalsBase Pair MismatchDNA-Binding ProteinsDNA RepairEndonucleasesMiceMice, Inbred C57BLMutationMutS Homolog 2 ProteinProto-Oncogene ProteinsDNA-Binding ProteinsEndonucleasesErcc1 protein, mouseMsh2 protein, mouseMutS Homolog 2 ProteinProto-Oncogene Proteins

Identifiers

PMID15280420
PMCPMC2211985
OpenAlexW2110163961

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.