ArticleGenetics2004
Wide-cross whole-genome radiation hybrid mapping of cotton (Gossypium hirsutum L.).
Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Physical mapping of repetitive oligonucleotides facilitates the establishment of a genome map-based karyotype to identify chromosomal variations in peanut.BMC plant biology · 2021Article
- Construction ofInternational journal of molecular sciences · 2020Article
- Physical mapping of chromosome 4J of Thinopyrum bessarabicum using gamma radiation-induced aberrations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts.BMC genomics · 2014Article
- Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii.BMC genomics · 2012Article
- DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum.BMC genomics · 2012Article
- A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome.G3 (Bethesda, Md.) · 2012Article
- Construction of whole genome radiation hybrid panels and map of chromosome 5A of wheat using asymmetric somatic hybridization.PloS one · 2012Article
- Article
- Sampling nucleotide diversity in cotton.BMC plant biology · 2009Article
- High-resolution radiation hybrid map of wheat chromosome 1D.Genetics · 2006Article
- Article
- Wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium barbadense L.) genome.Molecular genetics and genomics : MGG · 2006Article
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We report the development and characterization of a "wide-cross whole-genome radiation hybrid" (WWRH) panel from cotton (Gossypium hirsutum L.). Chromosomes were segmented by gamma-irradiation of G. hirsutum (n = 26) pollen, and segmented chromosomes were rescued after in vivo fertilization of G. barbadense egg cells (n = 26). A 5-krad gamma-ray WWRH mapping panel (N = 93) was constructed and genotyped at 102 SSR loci. SSR marker retention frequencies were higher than those for animal systems and marker retention patterns were informative. Using the program RHMAP, 52 of 102 SSR markers were mapped into 16 syntenic groups. Linkage group 9 (LG 9) SSR markers BNL0625 and BNL2805 had been colocalized by linkage analysis, but their order was resolved by differential retention among WWRH plants. Two linkage groups, LG 13 and LG 9, were combined into one syntenic group, and the chromosome 1 linkage group marker BNL4053 was reassigned to chromosome 9. Analyses of cytogenetic stocks supported synteny of LG 9 and LG 13 and localized them to the short arm of chromosome 17. They also supported reassignment of marker BNL4053 to the long arm of chromosome 9. A WWRH map of the syntenic group composed of linkage groups 9 and 13 was constructed by maximum-likelihood analysis under the general retention model. The results demonstrate not only the feasibility of WWRH panel construction and mapping, but also complementarity to traditional linkage mapping and cytogenetic methods.
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