Evidence map›Paper›PMID 15277472›Full record

ArticleInvestigative ophthalmology & visual science2004

Kruppel-like factor 15, a zinc-finger transcriptional regulator, represses the rhodopsin and interphotoreceptor retinoid-binding protein promoters.

Deborah C Otteson, Yuhui Liu, Hong Lai, ChenWei Wang, Susan Gray, Mukesh K Jain, Donald J Zack

Open access · greenAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Glucose uptake by GLUT1 in photoreceptors is essential for outer segment renewal and rod photoreceptor survival.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  6. Article
  7. Krüppel-Like Factor 15 ModulatesFrontiers in cell and developmental biology · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Transcription factors CTCF and Pax6 are segregated to different cell types during retinal cell differentiation.Developmental dynamics : an official publication of the American Association of Anatomists · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Deborah C OttesonGuerrieri Center for Genetic Engineering and Molecular Ophthalmology at the Wilmer Eye Institute, and Department of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA.
Yuhui Liu
Hong Lai
ChenWei Wang
Susan Gray
Mukesh K Jain
Donald J Zack
Brigham and Women's Hospital · USHarvard University · USJohns Hopkins Medicine · US

Funding

REGULATION OF RHODOPSIN GENE EXPRESSIONR01EY009769 · NEI · JOHNS HOPKINS UNIVERSITY · PI ZACK, DONALD J. · 1992 to 2014
$8.1M
Visual Science Training ProgramT32EY007143 · NEI · JOHNS HOPKINS UNIVERSITY · PI Laura Ensign, JEREMY NATHANS · 1995 to 2026
$6.2M
Smad3 as an inhibitor of atherogenesisR01HL069477 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI JAIN, MUKESH KUMAR · 2001 to 2004
$1.5M
Role of CKLE in vascular smooth muscle cellsF32HL068474 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI GRAY, SUSAN JESSICA · 2001 to 2003
$100k
Regulation of Rhodopsin Expression: The Role of RKLFF32EY013499 · NEI · JOHNS HOPKINS UNIVERSITY · PI OTTESON, DEBORAH C · 2001 to 2002
$79k
NEI NIH HHS EY09769NEI NIH HHS F32 EY013499NEI NIH HHS F32EY13499NEI NIH HHS R01 EY009769NEI NIH HHS T32 EY007143NHLBI NIH HHS F32 HL068474NHLBI NIH HHS F32HL68474NHLBI NIH HHS HL69477NHLBI NIH HHS R01 HL069477
6 · The paper itself

Abstract

purposeTo identify novel transcriptional regulators of rhodopsin expression as a model for understanding photoreceptor-specific gene regulation.

methodsA bovine retinal cDNA library was screened in a yeast one-hybrid assay, with a 29-bp bovine rhodopsin promoter fragment as bait. Expression studies used RT-PCR and beta-galactosidase (LacZ) histochemistry of retinas from transgenic mice heterozygous for a targeted LacZ replacement of KLF15. Promoter transactivation assays measured luciferase expression in HEK293 cells transiently transfected with bovine rhodopsin or IRBP promoter-reporter constructs and expression constructs containing cDNAs for full or truncated KLF15, Crx (cone rod homeobox), and/or Nrl (neural retina leucine zipper). Data were analyzed with general linear models.

resultsThe zinc-finger transcription factor KLF15 was identified as a rhodopsin-promoter-binding protein in a yeast one-hybrid screen. Expression was detected by RT-PCR in multiple tissues, including the retina, where KLF15-LacZ was observed in the inner nuclear layer, ganglion cell layer, and pigmented epithelial cells, but not in photoreceptors. KLF15 repressed transactivation of rhodopsin and IRBP promoters alone and in combination with the transcriptional activators Crx and/or Nrl. Repressor activity required both a 198-amino-acid element in the N-terminal domain and the C-terminal zinc finger DNA-binding domains.

conclusionsThe zinc finger containing transcription factor KLF15 is a transcriptional repressor of the rhodopsin and IRBP promoters in vitro and, in the retina, is a possible participant in repression of photoreceptor-specific gene expression in nonphotoreceptor cells.

Indexed as

Promoter Regions, GeneticAmino Acid SequenceAnimalsCattleEye ProteinsGene Expression RegulationGene LibraryHumansImmunoenzyme TechniquesIn Situ HybridizationKruppel-Like Transcription FactorsMiceMice, TransgenicMolecular Sequence DataNuclear ProteinsPhotoreceptor Cells, VertebrateEye ProteinsKLF15 protein, humanKruppel-Like Transcription FactorsNuclear ProteinsRepressor ProteinsRetinol-Binding ProteinsRetinol-Binding Proteins, InterstitialRhodopsinTranscription Factors

Identifiers

PMID15277472
PMCPMC2660604
OpenAlexW2017551130

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.