Evidence map›Paper›PMID 15273297›Full record

ArticleThe Plant cell2004

Functional specialization amongst the Arabidopsis Toc159 family of chloroplast protein import receptors.

Sybille Kubis, Ramesh Patel, Jonathan Combe, Jocelyn Bédard, Sabina Kovacheva, Kathryn Lilley, Alexander Biehl, Dario Leister, Gabino Ríos, Csaba Koncz and 1 more

Abstract read
In one paragraph

Article in The Plant cell, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed.

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  12. Low-Speed Clinorotation ofInternational journal of molecular sciences · 2023
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37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sybille KubisDepartment of Biology, University of Leicester, Leicester LE1 7RH, United Kindom.
Ramesh Patel
Jonathan Combe
Jocelyn Bédard
Sabina Kovacheva
Kathryn Lilley
Alexander Biehl
Dario Leister
Gabino Ríos
Csaba Koncz
Paul Jarvis

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The initial stages of preprotein import into chloroplasts are mediated by the receptor GTPase Toc159. In Arabidopsis thaliana, Toc159 is encoded by a small gene family: atTOC159, atTOC132, atTOC120, and atTOC90. Phylogenetic analysis suggested that at least two distinct Toc159 subtypes, characterized by atToc159 and atToc132/atToc120, exist in plants. atTOC159 was strongly expressed in young, photosynthetic tissues, whereas atTOC132 and atTOC120 were expressed at a uniformly low level and so were relatively prominent in nonphotosynthetic tissues. Based on the albino phenotype of its knockout mutant, atToc159 was previously proposed to be a receptor with specificity for photosynthetic preproteins. To elucidate the roles of the other isoforms, we characterized Arabidopsis knockout mutants for each one. None of the single mutants had strong visible phenotypes, but toc132 toc120 double homozygotes appeared similar to toc159, indicating redundancy between atToc132 and atToc120. Transgenic complementation studies confirmed this redundancy but revealed little functional overlap between atToc132/atToc120 and atToc159 or atToc90. Unlike toc159, toc132 toc120 caused structural abnormalities in root plastids. Furthermore, when proteomics and transcriptomics were used to compare toc132 with ppi1 (a receptor mutant that is specifically defective in the expression, import, and accumulation of photosynthetic proteins), major differences were observed, suggesting that atToc132 (and atToc120) has specificity for nonphotosynthetic proteins. When both atToc159 and the major isoform of the other subtype, atToc132, were absent, an embryo-lethal phenotype resulted, demonstrating the essential role of Toc159 in the import mechanism.

Indexed as

ArabidopsisArabidopsis ProteinsCarrier ProteinsChloroplastsGene Expression ProfilingGenetic Complementation TestGenotypeGTP PhosphohydrolasesMembrane ProteinsMolecular Sequence DataMultigene FamilyMutationOligonucleotide Array Sequence AnalysisPhenotypePhylogenyPlants, Genetically ModifiedArabidopsis ProteinsAT2G16640 protein, ArabidopsisCarrier ProteinsGTP PhosphohydrolasesMembrane ProteinsPpi1 protein, ArabidopsisProtein IsoformsReceptors, Cytoplasmic and NuclearTOC159 protein, Arabidopsis

Identifiers

PMID15273297
PMCPMC519198

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.