Evidence map›Paper›PMID 15271923›Full record

ArticleInfection and immunity2004

Pneumocystis carinii cell wall biosynthesis kinase gene CBK1 is an environmentally responsive gene that complements cell wall defects of cbk-deficient yeast.

Theodore J Kottom, Andrew H Limper

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Chitinases in Pneumocystis carinii pneumonia.Medical microbiology and immunology · 2012
    Article
  9. Review
  10. Article
  11. Article
  12. Pneumocystis carinii expresses an active Rtt109 histone acetyltransferase.American journal of respiratory cell and molecular biology · 2011
    Article
  13. Article
  14. Article
  15. The Pneumocystis meiotic PCRan1p kinase exhibits unique temperature-regulated activity.American journal of respiratory cell and molecular biology · 2009
    Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Theodore J KottomThoracic Diseases Research Unit, Department of Medicine, Mayo Clinic, Rochester, MN 55905, USA.
Andrew H Limper
Mayo Clinic in Florida · US

Funding

Pneumocystis: Macrophage & Epithelial ActivationR01HL062150 · NHLBI · MAYO CLINIC ROCHESTER · PI ANDREW H LIMPER · 1998 to 2026
$9.2M
Control of the Pneumocystis carinii Life CycleR01HL055934 · NHLBI · MAYO CLINIC ROCHESTER · PI LIMPER, ANDREW H · 1995 to 2008
$3.0M
NHLBI NIH HHS R01 HL055934NHLBI NIH HHS R01 HL062150NHLBI NIH HHS R01 HL55934NHLBI NIH HHS R01 HL62150
6 · The paper itself

Abstract

Pneumocystis species remain an important cause of life-threatening pneumonia in immunocompromised hosts, including those with AIDS. Responses of the organism to environmental cues both within the lung and elsewhere have been poorly defined. Herein, we report the identification of a cell wall biosynthesis kinase gene (CBK1) homologue in Pneumocystis carinii, isolated by differential display PCR, that is expressed optimally at physiological pH (7 to 8) as opposed to more acidic environments. Expression of Pneumocystis CBK1 was also induced by contact with lung epithelial cells and extracellular matrix. Translation of this gene revealed extensive homology to other fungal CBK1 kinases. Pneumocystis CBK1 expression was equal in the cyst and trophic life forms of the organisms. We further demonstrate that Pneumocystis CBK1 expressed in cbk1 Delta Saccharomyces cerevisiae cells restored defective cell wall separation during proliferation. Consistent with this, Pneumocystis CBK1 expression also stimulated transcription of the CTS1 chitinase in cbk1 Delta mutant yeast cells, an event necessary for cell wall separation. In addition, Pneumocystis CBK1 cDNA supported normal mating projection formation in response to alpha-factor in the cbk1 Delta yeast cells. Site-directed mutations of serine-303 and threonine-494, potential regulatory phosphorylation sites in Pneumocystis CBK1, abolished mating projection formation, indicating a role for these amino acid residues in CBK1 activity. These findings indicate that Pneumocystis CBK1 is an environmentally responsive gene that may function in signaling pathways necessary for cell growth and mating.

Indexed as

EnvironmentGene Expression Regulation, FungalAmino Acid SequenceAnimalsCell AdhesionCell WallCulture MediaFungal ProteinsGenetic Complementation TestHeat-Shock ResponseHumansHydrogen-Ion ConcentrationMolecular Sequence DataPneumocystis cariniiProtein Serine-Threonine KinasesRatsCulture MediaFungal ProteinsProtein Serine-Threonine Kinases

Identifiers

PMID15271923
PMCPMC470662
OpenAlexW2137168321

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.