Evidence map›Paper›PMID 15263850›Full record

ArticleJournal of structural and functional genomics2004

Automation of protein purification for structural genomics.

Youngchang Kim, Irina Dementieva, Min Zhou, Ruiying Wu, Lour Lezondra, Pearl Quartey, Grazyna Joachimiak, Olga Korolev, Hui Li, Andrzej Joachimiak

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of structural and functional genomics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 105 citations in OpenAlex.

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  5. Structural analysis of free and liganded forms of the Fab fragment of a high-affinity anti-cocaine antibody, h2E2.Acta crystallographica. Section F, Structural biology communications · 2019
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  7. Interaction of antidiabetic α-glucosidase inhibitors and gut bacteria α-glucosidase.Protein science : a publication of the Protein Society · 2018
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  17. EsxB, a secreted protein from Bacillus anthracis forms two distinct helical bundles.Protein science : a publication of the Protein Society · 2015
    Article
  18. New aminopeptidase from "microbial dark matter" archaeon.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2015
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  19. Hydrogen bond donation to the heme distal ligand of Staphylococcus aureus IsdG tunes the electronic structure.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Youngchang KimBiosciences Division and Structural Biology Center, Argonne National Laboratory, 9700 S. Cass Ave., Bldg 202, Argonne, IL 60439, USA.
Irina Dementieva
Min Zhou
Ruiying Wu
Lour Lezondra
Pearl Quartey
Grazyna Joachimiak
Olga Korolev
Hui Li
Andrzej Joachimiak
Argonne National Laboratory · US

Funding

THE MIDWEST CENTER FOR STRUCTURAL GENOMICSP50GM062414 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ JOACHIMIAK · 2000 to 2004
$33.2M
NIGMS NIH HHS GM62414NIGMS NIH HHS P50 GM062414
6 · The paper itself

Abstract

A critical issue in structural genomics, and in structural biology in general, is the availability of high-quality samples. The additional challenge in structural genomics is the need to produce high numbers of proteins with low sequence similarities and poorly characterized or unknown properties. 'Structural-biology-grade' proteins must be generated in a quantity and quality suitable for structure determination experiments using X-ray crystallography or nuclear magnetic resonance (NMR). The choice of protein purification and handling procedures plays a critical role in obtaining high-quality protein samples. The purification procedure must yield a homogeneous protein and must be highly reproducible in order to supply milligram quantities of protein and/or its derivative containing marker atom(s). At the Midwest Center for Structural Genomics we have developed protocols for high-throughput protein purification. These protocols have been implemented on AKTA EXPLORER 3D and AKTA FPLC 3D workstations capable of performing multidimensional chromatography. The automated chromatography has been successfully applied to many soluble proteins of microbial origin. Various MCSG purification strategies, their implementation, and their success rates are discussed in this paper.

Indexed as

AutomationChromatography, AffinityCloning, MolecularEscherichia coliGene ExpressionGenomicsProteomicsRecombinant ProteinsSoftwareSolubilityRecombinant Proteins

Identifiers

PMID15263850
PMCPMC2778303
OpenAlexW2045808714

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.