Evidence map›Paper›PMID 15258739›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004

Isolation and mapping of resistance gene analogs from the Avena strigosa genome.

M L Irigoyen, Y Loarce, A Fominaya, E Ferrer

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Identification of RFLP and NBS/PK profiling markers for disease resistance loci in genetic maps of oats.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013
    Article
  4. Article
  5. Article
  6. Isolation, characterization and expression studies of resistance gene candidates (RGCs) from Zingiber spp.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007
    Article
  7. Article
  8. Inheritance and mapping of a powdery mildew resistance gene introgressed from Avena macrostachya in cultivated oat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006
    Article
  9. Quantitative trait loci for partial resistance to crown rust, Puccinia coronata, in cultivated oat, Avena sativa L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005
    Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

4 authors.

M L IrigoyenDepartment of Cell Biology and Genetics, University of Alcalá, 28871 Alcalá de Henares, Campus Universitario, Madrid, Spain.
Y Loarce
A Fominaya
E Ferrer

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Degenerate primers based on conserved regions of the nucleotide binding site (NBS) domain (encoded by the largest group of cloned plant disease resistance genes) were used to isolate a set of 15 resistance gene analogs (RGA) from the diploid species Avena strigosa Schreb. These were grouped into seven classes on the basis of 60% or greater nucleic acid sequence identity. Representative clones were used for genetic mapping in diploid and hexaploid oats. Two RGAs were mapped at two loci of the linkage group AswBF belonging to the A. strigosa x A. wiestii Steud map, and ten RGAs were mapped at 15 loci in eight linkage groups belonging to the A. byzantina C. Koch cv. Kanota x A. sativa L. cv. Ogle map. A similar approach was used for targeting genes encoding receptor-like kinases. Three different sequences were obtained and mapped to two linkage groups of the hexaploid oat map. Associations were explored between already known disease resistance loci mapped in different populations and the RGAs. Molecular markers previously linked to crown rust and barley yellow dwarf resistance genes or quantitative trait loci were found in the Kanota x Ogle map linked to RGAs at a distance ranging from 0 cM to 20 cM. Homoeologous RGAs were found to be linked to loci either conferring resistance to different isolates of the same pathogen or to different pathogens. This suggests that these RGAs identify genome regions containing resistance gene clusters.

Indexed as

Chromosome MappingAmino Acid SequenceBase SequenceBinding SitesBreedingCluster AnalysisCrosses, GeneticGenetic MarkersImmunity, InnateMolecular Sequence DataNucleic Acid Amplification TechniquesPlant DiseasesPoaceaePolymorphism, Restriction Fragment LengthSequence AlignmentSequence Analysis, DNAGenetic Markers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.