Evidence map›Paper›PMID 15258579›Full record

ArticleNature immunology2004

B cell-specific loss of histone 3 lysine 9 methylation in the V(H) locus depends on Pax5.

Kristen Johnson, David L Pflugh, Duonan Yu, David G T Hesslein, Kuo-I Lin, Alfred L M Bothwell, Andrei Thomas-Tikhonenko, David G Schatz, Kathryn Calame

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 109 citations in OpenAlex.

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  19. Functional analysis of histone methyltransferase g9a in B and T lymphocytes.Journal of immunology (Baltimore, Md. : 1950) · 2008
    Article
  20. Reciprocal patterns of methylation of H3K36 and H3K27 on proximal vs. distal IgVH genes are modulated by IL-7 and Pax5.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kristen JohnsonDepartment of Microbiology, Columbia University College of Physicians and Surgeons, New York, New York 10032, USA.
David L Pflugh
Duonan Yu
David G T Hesslein
Kuo-I Lin
Alfred L M Bothwell
Andrei Thomas-Tikhonenko
David G Schatz
Kathryn Calame
Yale University · USColumbia University · USUniversity of Pennsylvania · US

Funding

Mechanism and Targeting of V(D)J RecombinationR01AI032524 · NIAID · YALE UNIVERSITY · PI David G. Schatz · 1992 to 2026
$6.7M
B LYMPHOCYTE INDUCED MATURATION PROTEINR01AI043576 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALAME, KATHRYN L. · 1998 to 2007
$2.7M
LY6 MULTIGENE FAMILYR01GM040924 · NIGMS · YALE UNIVERSITY · PI BOTHWELL, ALFRED LM · 1989 to 2004
$1.4M
Interplay between Pax5 and Myc in B-lymphomagenesisR01CA102709 · NCI · UNIVERSITY OF PENNSYLVANIA · PI THOMAS-TIKHONENKO, ANDREI · 2003 to 2006
$1.2M
NCI NIH HHS R01 CA102709NIAID NIH HHS R01 AI032524NIAID NIH HHS R01 AI043576NIAID NIH HHS R01 AI32524NIAID NIH HHS R01 AI43576NIGMS NIH HHS GM40924NIGMS NIH HHS R01 GM040924
6 · The paper itself

Abstract

Immunoglobulin heavy chain rearrangement (V(H)-to-DJ(H)) occurs only in B cells, suggesting it is inhibited in other lineages. Here we found that in the mouse V(H) locus, methylation of lysine 9 on histone H3 (H3-K9), a mark of inactive chromatin, was present in non-B lineage cells but was absent in B cells. As others have shown that H3-K9 methylation can inhibit V(D)J recombination on engineered substrates, our data support the idea that H3-K9 methylation inhibits endogenous V(H)-to-DJ(H) recombination. We also show that Pax5, a transcription factor required for B cell commitment, is necessary and sufficient for the removal of H3-K9 methylation in the V(H) locus and provide evidence that one function of Pax5 is to remove this inhibitory modification by a mechanism of histone exchange, thus allowing B cell-specific V(H)-to-DJ(H) recombination.

Indexed as

AnimalsBase SequenceB-LymphocytesCell LineageCells, CulturedDNA-Binding ProteinsFlow CytometryGene Rearrangement, B-LymphocyteHematopoietic Stem CellsHistonesImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionLysineMethylationMiceModels, ImmunologicalDNA-Binding ProteinsHistonesImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionLysinePax5 protein, mousePAX5 Transcription FactorTranscription Factors

Identifiers

PMID15258579
PMCPMC1635547
OpenAlexW2012614480

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.