Evidence map›Paper›PMID 15254368›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2004

Nuclear organization of centromeric domains is not perturbed by inhibition of histone deacetylases.

Susan Gilchrist, Nick Gilbert, Paul Perry, Wendy A Bickmore

Abstract read
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In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Review
  3. Inhibitors of Histone Deacetylases Attenuate Noise-Induced Hearing Loss.Journal of the Association for Research in Otolaryngology : JARO · 2016
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Gene positioning and expression.Current opinion in cell biology · 2011
    Review
  11. Perinuclear distribution of heterochromatin in developing C. elegans embryos.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010
    Article
  12. Article
  13. Article
  14. Article
  15. Histone modifications and nuclear architecture: a review.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2008
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Susan GilchristMRC Human Genetics Unit, Crewe Road, Edinburgh EH4 2XU, UK.
Nick Gilbert
Paul Perry
Wendy A Bickmore
MRC Institute of Genetics and Molecular Medicine · GBMRC Human Genetics Unit

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is well established that modification of lysines in histone molecules correlates with gene expression and chromatin structure. It is not known whether this operates entirely at a local level, e.g. through the recruitment of specific proteins, or whether histone modifications might impact on more long-range aspects of chromatin organization. There is a distinctive organization of chromatin within the nucleus and the chromatin at the nuclear periphery of mammalian cells appears to be hypoacetylated. Previously it had been suggested that inhibition of histone deacetylases by TSA causes a gross remodeling of nuclear structure, specifically the recruitment of centromeric heterochromatin to the nuclear periphery. Here, we have quantified the nuclear organization of histone modifications and the localization of centromeric domains in human cells before and after TSA treatment. TSA alters the nuclear distribution of histone acetylation, but not that of histone methylation. TSA elevates levels of histone acetylation at the nuclear periphery but we see no alteration in the position of centromeric domains in the nuclei of treated cells. We conclude that the distinctive nuclear localization of centromeric domains is independent of histone acetylation.

Indexed as

CentromereHistone Deacetylase InhibitorsAcetylationCell NucleusFibroblastsHistone DeacetylasesHistonesHumansHydroxamic AcidsMethylationHistone Deacetylase InhibitorsHistone DeacetylasesHistonesHydroxamic Acidstrichostatin A

Identifiers

PMID15254368
OpenAlexW2119143930

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.