Evidence map›Paper›PMID 15254250›Full record

ArticleMolecular and cellular biology2004

DNA cleavage activity of the V(D)J recombination protein RAG1 is autoregulated.

Pallabi De, Mandy M Peak, Karla K Rodgers

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Structure and Function of SNM1 Family Nucleases.Advances in experimental medicine and biology · 2023
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. An amphioxus RAG1-like DNA fragment encodes a functional central domain of vertebrate core RAG1.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Pallabi DeDepartment of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73190, USA.
Mandy M Peak
Karla K Rodgers
University of Oklahoma Health Sciences Center · US

Funding

Protein-DNA Interactions in V(D)J RecombinationR01AI054467 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI RODGERS, KARLA K · 2003 to 2007
$1.1M
NIAID NIH HHS AI 054467NIAID NIH HHS R01 AI054467
6 · The paper itself

Abstract

RAG1 and RAG2 catalyze the first DNA cleavage steps in V(D)J recombination. We demonstrate that the isolated central domain of RAG1 has inherent single-stranded (ss) DNA cleavage activity, which does not require, but is enhanced by, RAG2. The central domain, therefore, contains the active-site residues necessary to perform hydrolysis of the DNA phosphodiester backbone. Furthermore, the catalytic activity of this domain on ss DNA is abolished by addition of the C-terminal domain of RAG1. The inhibitory effects of this latter domain are suppressed on substrates containing double-stranded (ds) DNA. Together, the activities of the reconstituted domains on ss versus mixed ds-ss DNA approximate the activity of intact RAG1 in the presence of RAG2. We propose how the combined actions of the RAG1 domains may function in V(D)J recombination and also in aberrant cleavage reactions that may lead to genomic instability in B and T lymphocytes.

Indexed as

Gene Expression Regulation, EnzymologicAnimalsBase SequenceBinding SitesB-LymphocytesCatalytic DomainDNADNA-Binding ProteinsHomeodomain ProteinsHydrolysisMetalsMiceMolecular Sequence DataMutagenesis, Site-DirectedOligonucleotidesProtein Structure, TertiaryDNADNA-Binding ProteinsHomeodomain ProteinsMetalsOligonucleotidesRAG-1 proteinRag2 protein, mouseRecombinant Fusion ProteinsVDJ RecombinasesV(D)J recombination activating protein 2

Identifiers

PMID15254250
PMCPMC444861
OpenAlexW2163138552

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.