Evidence map›Paper›PMID 15254202›Full record

ArticleJournal of virology2004

Dileucine and YXXL motifs in the cytoplasmic tail of the bovine leukemia virus transmembrane envelope protein affect protein expression on the cell surface.

Sinisa Novakovic, Earl T Sawai, Kathryn Radke

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. The LPAInternational journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Sinisa NovakovicDepartment of Animal Science, University of California, Davis, Davis, CA 95616-8521, USA.
Earl T Sawai
Kathryn Radke
Microbiology Society · GBUniversity of California, Davis · US

Funding

PATHOGENIC CONVERSION OF ATTENUATED SIV VACCINESR01AI046145 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI SAWAI, EARL T · 2000 to 2003
$1.2M
TARGET CELL SPECIFICITY OF BOVINE LEUKEMIA VIRUSR01CA046374 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI RADKE, KATHRYN · 1988 to 1995
–
CELLULAR REGULATION OF BOVINE LEUKEMIA VIRUS REPLICATIONR55CA046374 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI RADKE, KATHRYN · 1991 to 1991
–
NCI NIH HHS CA46374NIAID NIH HHS AI46145NIAID NIH HHS R01 AI046145
6 · The paper itself

Abstract

Several retroviruses downmodulate the cell surface expression of envelope (Env) proteins through peptide sequences located in the cytoplasmic tail of the transmembrane (TM) subunit. We investigated whether cell surface expression of a chimeric protein containing the cytoplasmic domain of the TM protein (CTM) of bovine leukemia virus (BLV) was regulated by two membrane-proximal dileucine motifs or by tyrosine Y487 or Y498 in YXXL motifs. A chimeric protein composed of the extracellular and membrane-spanning portions of human CD8-alpha plus a wild-type (wt) BLV CTM was detectable on the surface of only 40% of the cells in which it was transiently expressed. Replacement of either dileucine pair with alanines increased the level of surface display of chimeric proteins. Nearly all cells became surface positive when both dileucine motifs were altered simultaneously and when either an N-terminal segment containing both dileucine motifs or a C-terminal segment containing all YXXL motifs was deleted. In contrast, replacement of Y487 or Y498 with alanine or phenylalanine enabled only small increases in surface display compared with wt levels. Chimeric proteins had similar stabilities but were downmodulated from the cell surface at three different rates. Point mutants segregated into each of the three groups of proteins categorized according to these different rates. Interestingly, Y487 mutants were downmodulated less efficiently than Y498 mutants, which behaved like wt. CD8-CTM chimeric proteins were phosphorylated on serine residues, but the native BLV Env protein was not phosphorylated either in transfected cells or in a lymphoid cell line constitutively producing BLV. Thus, both dileucine and YXXL motifs within the BLV CTM contribute to downmodulation of a protein containing this domain. Interactions with other proteins may influence surface exposure of Env protein complexes in virus-infected cells, assisting in viral evasion of adaptive immunity.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsBase SequenceCell MembraneCOS CellsCytoplasmHumansIntracellular Signaling Peptides and ProteinsLeukemia Virus, BovineMolecular Sequence DataPhosphorylationProtein Tyrosine Phosphatase, Non-Receptor Type 6Protein Tyrosine PhosphatasesRecombinant Fusion ProteinsViral Envelope ProteinsIntracellular Signaling Peptides and ProteinsProtein Tyrosine Phosphatase, Non-Receptor Type 6Protein Tyrosine PhosphatasesPTPN6 protein, humanRecombinant Fusion ProteinsViral Envelope Proteins

Identifiers

PMID15254202
PMCPMC446140
OpenAlexW2017846637

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.