Evidence map›Paper›PMID 15254161›Full record

ArticleJournal of virology2004

Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection.

Jennifer A Fulcher, Yon Hwangbo, Rafael Zioni, David Nickle, Xudong Lin, Laura Heath, James I Mullins, Lawrence Corey, Tuofu Zhu

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 88 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jennifer A FulcherDepartment of Laboratory Medicine, University of Washington School of Medicine, Seattle, WA 98195-8070, USA.
Yon Hwangbo
Rafael Zioni
David Nickle
Xudong Lin
Laura Heath
James I Mullins
Lawrence Corey
Tuofu Zhu
University of Washington · USFred Hutch Cancer Center · US

Funding

IMMUNOLOGY AND MOLECULAR VIROLOGY OF ACUTE HIV INFECTIONU01AI041535 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI COREY, LAWRENCE · 1997 to 2003
$6.0M
Minimal Levels of HIV-1 in Vaccinated &Exposed PersonsR01AI055336 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, TUOFU · 2003 to 2007
$1.6M
Role of CD14+ Monocytes in HIV-1 InfectionR01AI049109 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, TUOFU · 2001 to 2005
$1.3M
SUPPRESSING HIV INFECTION IN EXPOSED SERONEGATIVE ADULTSR01AI045402 · NIAID · UNIVERSITY OF WASHINGTON · PI ZHU, TUOFU · 1999 to 2003
$873k
NIAID NIH HHS AI055336NIAID NIH HHS AI41535NIAID NIH HHS AI45402NIAID NIH HHS AI49109NIAID NIH HHS R01 AI045402NIAID NIH HHS R01 AI049109NIAID NIH HHS R01 AI055336
6 · The paper itself

Abstract

Distinct sequences of human immunodeficiency virus type 1 (HIV-1) have been found between different tissue compartments or subcompartments within a given tissue. Whether such compartmentalization of HIV-1 occurs between different cell populations is still unknown. Here we address this issue by comparing HIV-1 sequences in the second constant region through the fifth hypervariable region (C2 to V5) of the surface envelope glycoprotein (Env) between viruses in purified blood CD14(+) monocytes and CD4(+) T cells obtained longitudinally from five infected patients over a time period ranging from 117 to 3,409 days postseroconversion. Viral populations in both cell types at early infection time points appeared relatively homogeneous. However, later in infections, all five patients showed heterogeneous populations in both CD14(+) monocytes and CD4(+) T cells. Three of the five patients had CD14(+) monocyte populations with significantly more genetic diversity than the CD4(+) T-cell population, while the other two patients had more genetic diversity in CD4(+) T cells. The cellular compartmentalization of HIV-1 between CD14(+) monocytes and CD4(+) T cells was not seen early during infections but was evident at the later time points for all five patients, indicating an association of viral compartmentalization with the time course of HIV-1 infection. The majority of HIV-1 V3 sequences indicated a macrophage-tropic phenotype, while a V3 sequence-predicted T-cell tropic virus was found in the CD4(+) T cells and CD14(+) monocytes of two patients. These findings suggest that HIV-1 in CD14(+) monocytes could disseminate and evolve independently from that in CD4(+) T cells over the course of HIV-1 infection, which may have implications on the development of new therapeutic strategies.

Indexed as

Acquired Immunodeficiency SyndromeAmino Acid SequenceCD4-Positive T-LymphocytesCell CompartmentationDNA, ViralFemaleHIV-1HumansMaleMolecular Sequence DataMonocytesPhylogenyDNA, Viral

Identifiers

PMID15254161
PMCPMC446117
OpenAlexW2010908199

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.