Evidence map›Paper›PMID 15252202›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Attenuation control of pyrG expression in Bacillus subtilis is mediated by CTP-sensitive reiterative transcription.

Qi Meng, Charles L Turnbough, Robert L Switzer

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Structural and mechanistic basis of reiterative transcription initiation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. Article
  4. Article
  5. Regulation of Bacterial Gene Expression by Transcription Attenuation.Microbiology and molecular biology reviews : MMBR · 2019
    Review
  6. Article
  7. X-ray crystal structure of a reiterative transcription complex reveals an atypical RNA extension pathway.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Monitoring abortive initiation.Methods (San Diego, Calif.) · 2009
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Qi MengDepartment of Biochemistry, University of Illinois at Urbana-Champaign, 61801, USA.
Charles L Turnbough
Robert L Switzer
University of Illinois Urbana-Champaign · USUniversity of Alabama at Birmingham · US

Funding

NOVEL CONTROL MECHANISMS IN ENDOSPORE FORMATIONR01GM047112 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI SWITZER, ROBERT L · 1991 to 2006
$2.0M
REGULATION OF PYRIMIDINE GENE EXPRESSION IN BACTERIAR01GM029466 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI TURNBOUGH, CHARLES L. · 1985 to 2001
$604k
NIGMS NIH HHS GM29466NIGMS NIH HHS GM47112NIGMS NIH HHS R01 GM029466NIGMS NIH HHS R01 GM047112
6 · The paper itself

Abstract

In Bacillus subtilis and other Gram-positive bacteria, pyrimidine-mediated regulation of the pyrG gene, which encodes CTP synthetase, occurs through an attenuation mechanism involving an intrinsic transcription terminator in the pyrG leader region. Low intracellular levels of CTP prevent termination at the attenuator by a mechanism that requires the nontemplate strand sequence GGGC at the pyrG transcription initiation site (first G =+1) and the leader transcript sequence GCUCCC located at the 5' end of the terminator RNA hairpin. In this study, we demonstrate that reiterative transcription adds G residues (up to at least 10) to the 5' end of pyrG transcripts when B. subtilis cells are starved for pyrimidines but not when cells are grown with excess cytidine. Regulated repetitive addition of G residues, as well as pyrimidine-mediated pyrG regulation, requires the sequence GGGC or GGGT at the start of pyrG transcription. Mutational insertion of four extra G residues at the 5' end of the pyrG transcript (i.e., 5'-GGGGGGGC) results in constitutive pyrG expression. We propose that the incorporation of extra G residues by reiterative transcription at the wild-type promoter occurs when normal transcription elongation is stalled at position +4 by low levels of the incoming substrate, CTP, during pyrimidine limitation. The poly(G) extensions on the 5' ends of pyrG transcripts act to prevent transcription attenuation by base pairing with the sequence CUCCCUUUC located in the 5' strand of the terminator hairpin. This control mechanism is likely to operate in other Gram-positive bacteria containing similar pyrG leader sequences.

Indexed as

5' Untranslated RegionsBacillus subtilisBacterial ProteinsBase Sequencebeta-GalactosidaseCarbon-Nitrogen LigasesCytidine TriphosphateDNA, BacterialDNA PrimersGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicMolecular Sequence DataNucleic Acid ConformationPlasmidsPolymerase Chain ReactionRNA, Bacterial5' Untranslated RegionsBacterial Proteinsbeta-GalactosidaseCarbon-Nitrogen LigasesCTP synthetaseCytidine TriphosphateDNA, BacterialDNA PrimersRNA, Bacterial

Identifiers

PMID15252202
PMCPMC503723
OpenAlexW2141408382

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.