Evidence map›Paper›PMID 15243160›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

GTF2IRD2 is located in the Williams-Beuren syndrome critical region 7q11.23 and encodes a protein with two TFII-I-like helix-loop-helix repeats.

Aleksandr V Makeyev, Lkhamsuren Erdenechimeg, Ognoon Mungunsukh, Jutta J Roth, Badam Enkhmandakh, Frank H Ruddle, Dashzeveg Bayarsaihan

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Evolution of general transcription factors.Journal of molecular evolution · 2013
    Article
  6. Article
  7. Review
  8. Review
  9. Essential functions of the Williams-Beuren syndrome-associated TFII-I genes in embryonic development.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  10. Williams-Beuren syndrome TRIM50 encodes an E3 ubiquitin ligase.European journal of human genetics : EJHG · 2008
    Article
  11. Identification of the TFII-I family target genes in the vertebrate genome.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Aleksandr V MakeyevDepartment of Molecular, Cellular, and Developmental Biology, Yale University, 266 Whitney Avenue, New Haven, CT 06520, USA.
Lkhamsuren Erdenechimeg
Ognoon Mungunsukh
Jutta J Roth
Badam Enkhmandakh
Frank H Ruddle
Dashzeveg Bayarsaihan
Columbia University · USUniversity of Louisville · USYale University · USUniversity of Salzburg · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Williams-Beuren syndrome (also known as Williams syndrome) is caused by a deletion of a 1.55- to 1.84-megabase region from chromosome band 7q11.23. GTF2IRD1 and GTF2I, located within this critical region, encode proteins of the TFII-I family with multiple helix-loop-helix domains known as I repeats. In the present work, we characterize a third member, GTF2IRD2, which has sequence and structural similarity to the GTF2I and GTF2IRD1 paralogs. The ORF encodes a protein with several features characteristic of regulatory factors, including two I repeats, two leucine zippers, and a single Cys-2/His-2 zinc finger. The genomic organization of human, baboon, rat, and mouse genes is well conserved. Our exon-by-exon comparison has revealed that GTF2IRD2 is more closely related to GTF2I than to GTF2IRD1 and apparently is derived from the GTF2I sequence. The comparison of GTF2I and GTF2IRD2 genes revealed two distinct regions of homology, indicating that the helix-loop-helix domain structure of the GTF2IRD2 gene has been generated by two independent genomic duplications. We speculate that GTF2I is derived from GTF2IRD1 as a result of local duplication and the further evolution of its structure was associated with its functional specialization. Comparison of genomic sequences surrounding GTF2IRD2 genes in mice and humans allows refinement of the centromeric breakpoint position of the primate-specific inversion within the Williams-Beuren syndrome critical region.

Indexed as

Amino Acid SequenceAnimalsCentromereChromosome MappingChromosomes, Human, Pair 7Conserved SequenceHelix-Loop-Helix MotifsHumansMiceMolecular Sequence DataMuscle ProteinsNuclear ProteinsSequence AlignmentSequence Homology, Amino AcidTrans-ActivatorsWilliams SyndromeGTF2IRD1 protein, humanGtf2ird1 protein, mouseMuscle ProteinsNuclear ProteinsTrans-Activators

Identifiers

PMID15243160
PMCPMC503739
OpenAlexW1968326947

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.