Evidence map›Paper›PMID 15240832›Full record

ArticleNucleic acids research2004

The 'scavenger' m7GpppX pyrophosphatase activity of Dcs1 modulates nutrient-induced responses in yeast.

Naglis Malys, Kathleen Carroll, Jaleel Miyan, David Tollervey, John E G McCarthy

Abstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Cytoplasmic mRNA turnover and ageing.Mechanisms of ageing and development · 2015
    Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Activation of 5'-3' exoribonuclease Xrn1 by cofactor Dcs1 is essential for mitochondrial function in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Current awareness on yeast.Yeast (Chichester, England) · 2005
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Naglis MalysPosttranscriptional Control Group, Department of Biomolecular Sciences, University of Manchester Institute of Science and Technology, Manchester M60 1QD, UK.
Kathleen Carroll
Jaleel Miyan
David Tollervey
John E G McCarthy

Funding

Wellcome Trust
6 · The paper itself

Abstract

Dcs1, the m7GpppX pyrophosphatase of Saccharomyces cerevisiae, has been reported to 'scavenge' capped 5' end fragments generated by 3'-->5' mRNA degradation. We now show that the absence of Dcs1, and the closely related Dcs2 protein, compromises cellular responses to glucose-deprivation stress as well as to step changes in glucose availability. Dcs1 and Dcs2 form homo- and heterodimers, with the heterodimer appearing as cells enter diauxie. Despite the previously observed increase in abundance of the mRNA encoding the neutral trehalase (Nth1) in the stationary phase, the total enzyme activity of Nth1 decreases in this phase of growth. Changes in trehalase activity are significant because the non-reducing disaccharide trehalose is thought to stabilize cellular components under stress conditions. In the dcs1Delta and dcs1Deltadcs2Delta mutants, normal regulation of trehalase activity is lost. Nutrient stress induces DCS1 and DCS2 transcription via the cAMP-PKA signalling pathway. Dcs1 also becomes phosphorylated as the availability of glucose diminishes, and we test the role of this phosphorylation in the stress response. Further evidence indicates that Dcs1 plays a complementary role to the translation factor eIF4E in preventing capped 5' fragments of mRNA from interfering with translation initiation. We conclude that Dcs1 function influences cellular responses to changes in nutrient avialability, while Dcs2 seems to act as a modulator of Dcs1 function.

Indexed as

Adaptor Proteins, Signal TransducingBase SequenceCulture MediaCyclic AMPCyclic AMP-Dependent Protein KinasesDimerizationEukaryotic Initiation Factor-4EGene Expression Regulation, FungalMolecular Sequence DataN-Glycosyl HydrolasesPhosphoproteinsPyrophosphatasesRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrehalase5'-(N(7)-methyl 5'-triphosphoguanosine)-(mRNA) diphosphataseAdaptor Proteins, Signal TransducingCulture MediaCyclic AMPCyclic AMP-Dependent Protein KinasesDCS1 protein, S cerevisiaeDcs2 protein, S cerevisiaeEukaryotic Initiation Factor-4EN-Glycosyl HydrolasesPhosphoproteinsPyrophosphatasesRNA, MessengerSaccharomyces cerevisiae ProteinsTrehalase

Identifiers

PMID15240832
PMCPMC484174

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.