ArticleApplied and environmental microbiology2004
Identification of bacterial populations in dairy wastewaters by use of 16S rRNA gene sequences and other genetic markers.
Article in Applied and environmental microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 82 citations in OpenAlex.
- Excess copper promotes catabolic activity of gram-positive bacteria and resistance of gram-negative bacteria but inhibits fungal community in soil.Environmental science and pollution research international · 2022Article
- From Pig Breeding Environment to Subsequently Produced Pork: Comparative Analysis of Antibiotic Resistance Genes and Bacterial Community Composition.Frontiers in microbiology · 2019Article
- DNA-based culture-independent analysis detects the presence of group a streptococcus in throat samples from healthy adults in Japan.BMC microbiology · 2016Article
- An Overview of the Control of Bacterial Pathogens in Cattle Manure.International journal of environmental research and public health · 2016Review
- Effect of Neem (Azadirachta indica) on the Survival of Escherichia coli O157:H7 in Dairy Manure.International journal of environmental research and public health · 2015Article
- Assessment of bacterial and archaeal community structure in Swine wastewater treatment processes.Microbial ecology · 2015Article
- Comparison of DNA extraction kits and modification of DNA elution procedure for the quantitation of subdominant bacteria from piggery effluents with real-time PCR.MicrobiologyOpen · 2014Article
- Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing.Applied microbiology and biotechnology · 2013Article
- Article
- Cow teat skin, a potential source of diverse microbial populations for cheese production.Applied and environmental microbiology · 2012Article
- Rapid qualitative characterization of bacterial community in eutrophicated wastewater stabilization plant by T-RFLP method based on 16S rRNA genes.World journal of microbiology & biotechnology · 2012Article
- Genetic diversity and population structure of Escherichia coli from neighboring small-scale dairy farms.Journal of microbiology (Seoul, Korea) · 2011Article
- Bacterial communities in aerosols and manure samples from two different dairies in central and Sonoma valleys of California.PloS one · 2011Article
- Animal-to-animal variation in fecal microbial diversity among beef cattle.Applied and environmental microbiology · 2010Article
- Alteration of the ileal microbiota of weanling piglets by the growth-promoting antibiotic chlortetracycline.Applied and environmental microbiology · 2009Article
- Sources of clostridia in raw milk on farms.Applied and environmental microbiology · 2008Article
- Comparison of soil bacterial communities under diverse agricultural land management and crop production practices.Microbial ecology · 2008Article
- Extractable organic components and nutrients in wastewater from dairy lagoons influence the growth and survival of Escherichia coli O157:H7.Applied and environmental microbiology · 2007Article
- Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses.Applied and environmental microbiology · 2007Article
- Bacterial population dynamics in dairy waste during aerobic and anaerobic treatment and subsequent storage.Applied and environmental microbiology · 2007Article
Corrections and comments
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Authors and funding
4 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Hydraulic flush waste removal systems coupled to solid/liquid separators and circulated treatment lagoons are commonly utilized to manage the large amounts of animal waste produced on high-intensity dairy farms. Although these systems are common, little is known about the microbial populations that inhabit them or how they change as they traverse the system. Using culture-based and non-culture-based methods, we characterized the microbial community structure of manure, water from the separator pit, and water from the circulated treatment lagoon from a large dairy in the San Joaquin Valley of California. Our results show that both total bacterial numbers and bacterial diversity are highest in manure, followed by the separator pit water and the lagoon water. The most prevalent phylum in all locations was the Firmicutes (low-G+C, gram-positive bacteria). The most commonly occurring operational taxonomic unit (OTU) had a 16S rRNA gene (rDNA) sequence 96 to 99% similar to that of Clostridium lituseburense and represented approximately 6% of the manure derived sequences, 14% of the separator pit-derived sequences and 20% of the lagoon-derived sequences. Also highly prevalent was an OTU with a 16S rDNA sequence 97 to 100% similar to that of Eubacterium tenue, comprising approximately 3% of the manure-derived sequences, 6% of the separator pit-derived sequences and 9% of the lagoon-derived sequences. Taken together, these sequences represent approximately one-third of the total organisms in the lagoon waters, suggesting that they are well adapted to this environment.
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