Evidence map›Paper›PMID 15240309›Full record

ArticleApplied and environmental microbiology2004

Natural atypical Listeria innocua strains with Listeria monocytogenes pathogenicity island 1 genes.

J Johnson, K Jinneman, G Stelma, B G Smith, D Lye, J Messer, J Ulaszek, L Evsen, S Gendel, R W Bennett and 12 more

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 134 citations in OpenAlex.

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  10. Genetic diversity and known virulence genes inVeterinary and animal science · 2023
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  11. Whole-genome sequencing ofFrontiers in microbiology · 2023
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  13. Food science & nutrition · 2022
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  15. Diagnostic challenges with accurate identification ofAfrican journal of laboratory medicine · 2022
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  16. Case Report: RefractoryFrontiers in pediatrics · 2022
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  17. Prevalence and transmission characteristics ofEmerging microbes & infections · 2021
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  20. Virulence Characterization ofPathogens (Basel, Switzerland) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 1 country.

J JohnsonFood and Drug Administration, Bothell, Washington 98021, USA.
K Jinneman
G Stelma
B G Smith
D Lye
J Messer
J Ulaszek
L Evsen
S Gendel
R W Bennett
B Swaminathan
J Pruckler
A Steigerwalt
S Kathariou
S Yildirim
D Volokhov
A Rasooly
V Chizhikov
M Wiedmann
E Fortes
R E Duvall
A D Hitchins
Center for Food Safety and Applied Nutrition · USOhio Environmental Protection Agency · USCenters for Disease Control and Prevention · USCenter for Biologics Evaluation and Research · USCornell University · USNorth Carolina State University · USUnited States Food and Drug Administration · USUniversity of Maryland, College Park · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of bona fide Listeria isolates into the six species of the genus normally requires only a few tests. Aberrant isolates do occur, but even then only one or two extra confirmatory tests are generally needed for identification to species level. We have discovered a hemolytic-positive, rhamnose and xylose fermentation-negative Listeria strain with surprising recalcitrance to identification to the species level due to contradictory results in standard confirmatory tests. The issue had to be resolved by using total DNA-DNA hybridization testing and then confirmed by further specific PCR-based tests including a Listeria microarray assay. The results show that this isolate is indeed a novel one. Its discovery provides the first fully documented instance of a hemolytic Listeria innocua strain. This species, by definition, is typically nonhemolytic. The L. innocua isolate contains all the members of the PrfA-regulated virulence gene cluster (Listeria pathogenicity island 1) of L. monocytogenes. It is avirulent in the mouse pathogenicity test. Avirulence is likely at least partly due to the absence of the L. monocytogenes-specific allele of iap, as well as the absence of inlA, inlB, inlC, and daaA. At least two of the virulence cluster genes, hly and plcA, which encode the L. monocytogenes hemolysin (listeriolysin O) and inositol-specific phospholipase C, respectively, are phenotypically expressed in this L. innocua strain. The detection by PCR assays of specific L. innocua genes (lin0198, lin0372, lin0419, lin0558, lin1068, lin1073, lin1074, lin2454, and lin2693) and noncoding intergenic regions (lin0454-lin0455 and nadA-lin2134) in the strain is consistent with its L. innocua DNA-DNA hybridization identity. Additional distinctly different hemolytic L. innocua strains were also studied.

Indexed as

Genes, BacterialAnimalsBase SequenceListeriaListeria monocytogenesMiceMolecular Sequence DataNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisPhylogenyPolymerase Chain ReactionRNA, Ribosomal, 16SSerotypingVirulenceRNA, Ribosomal, 16S

Identifiers

PMID15240309
PMCPMC444784
OpenAlexW2102234971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.