Evidence map›Paper›PMID 15235117›Full record

ArticlePlant physiology2004

Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures.

Yu Guan, Eugene A Nothnagel

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
10.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Glucosinolate O-methyltransferase mediated callus formation and affected ROS homeostasis inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2021
    Article
  9. The Arabinogalactan Protein Family ofPlants (Basel, Switzerland) · 2021
    Article
  10. Article
  11. Review
  12. Somatic Embryogenesis inPlants (Basel, Switzerland) · 2020
    Review
  13. Review
  14. Article
  15. Plant Cell Wall Proteomics: A Focus on Monocot Species,International journal of molecular sciences · 2019
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yu GuanDepartment of Botany and Plant Sciences, University of California, Riverside, California 92521, USA.
Eugene A Nothnagel
University of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arabinogalactan-proteins (AGPs) are cell wall proteoglycans and are widely distributed in the plant kingdom. Classical AGPs and some nonclassical AGPs are predicted to have a glycosylphosphatidylinositol lipid anchor and have been suggested to be involved in cell-cell signaling. Yariv phenylglycoside is a synthetic probe that specifically binds to plant AGPs and has been used to study AGP functions. We treated Arabidopsis suspension cell cultures with Yariv phenylglycoside and observed decreased cell viability, increased cell wall apposition and cytoplasmic vesiculation, and induction of callose deposition. The induction of cell wall apposition and callose synthesis led us to hypothesize that Yariv binding of plant surface AGPs triggers wound-like responses. To study the effect of Yariv binding to plant surface AGPs and to further understand AGP functions, an Arabidopsis whole genome array was used to monitor the transcriptional modifications after Yariv treatment. By comparing the genes that are induced by Yariv treatment with genes whose expressions have been previously shown to be induced by other conditions, we conclude that the gene expression profile induced by Yariv phenylglycoside treatment is most similar to that of wound induction. It remains uncertain whether the Yariv phenylglycoside cross-linking of cell surface AGPs induces these genes through a specific AGP-based signaling mechanism or through a general mechanical perturbation of the cell surface.

Indexed as

ArabidopsisArabidopsis ProteinsCell WallGene Expression Regulation, PlantGlucosidesGlycoproteinsGlycosidesKineticsMannansMannosidesOligonucleotide Array Sequence AnalysisPhloroglucinolPlant DiseasesArabidopsis Proteinsarabinomannan(beta-D-glucosyl)3 Yariv phenylglycoside(beta-D-mannosyl)3 Yariv phenylglycosideGlucosidesGlycoproteinsGlycosidesMannansMannosidesPhloroglucinolYariv reagent

Identifiers

PMID15235117
PMCPMC519053
OpenAlexW2090562453

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.