Evidence map›Paper›PMID 15231808›Full record

ArticleJournal of bacteriology2004

Evidence that the algI/algJ gene cassette, required for O acetylation of Pseudomonas aeruginosa alginate, evolved by lateral gene transfer.

Michael J Franklin, Stephanie A Douthit, Marcella A McClure

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Michael J FranklinDepartment of Microbiology, 109 Lewis Hall, Montana State University, Bozeman, MT 59717, USA. umbfm@montana.edu
Stephanie A Douthit
Marcella A McClure
Montana State University · US

Funding

MT INBRE RESEARCH COREP20RR016455 · NCRR · MONTANA STATE UNIVERSITY - BOZEMAN · PI HELD, SUZANNE EILEEN · 2001 to 2011
$34.4M
COMPUTER-BASED SEQUENCE ANALYSIS AND RNA VIRUS EVOLUTIONR01AI028309 · NIAID · UNIVERSITY OF NEVADA LAS VEGAS · PI MCCLURE, MARCELLA A · 1990 to 2007
$1.2M
GENE EXPRESSION OF P AERUGINOSA DURING BIOFILM DEVELOPMER01AI046588 · NIAID · MONTANA STATE UNIVERSITY (BOZEMAN) · PI FRANKLIN, MICHAEL J · 2000 to 2004
$1.1M
NCRR NIH HHS P20 RR016455NCRR NIH HHS P20/RR-16455-01NIAID NIH HHS AI-28309NIAID NIH HHS AI-46588NIAID NIH HHS R01 AI028309NIAID NIH HHS R01 AI046588
6 · The paper itself

Abstract

Pseudomonas aeruginosa strains, isolated from chronically infected patients with cystic fibrosis, produce the O-acetylated extracellular polysaccharide, alginate, giving these strains a mucoid phenotype. O acetylation of alginate plays an important role in the ability of mucoid P. aeruginosa to form biofilms and to resist complement-mediated phagocytosis. The O-acetylation process is complex, requiring a protein with seven transmembrane domains (AlgI), a type II membrane protein (AlgJ), and a periplasmic protein (AlgF). The cellular localization of these proteins suggests a model wherein alginate is modified at the polymer level after the transport of O-acetyl groups to the periplasm. Here, we demonstrate that this mechanism for polysaccharide esterification may be common among bacteria, since AlgI homologs linked to type II membrane proteins are found in a variety of gram-positive and gram-negative bacteria. In some cases, genes for these homologs have been incorporated into polysaccharide biosynthetic operons other than for alginate biosynthesis. The phylogenies of AlgI do not correlate with the phylogeny of the host bacteria, based on 16S rRNA analysis. The algI homologs and the gene for their adjacent type II membrane protein present a mosaic pattern of gene arrangement, suggesting that individual components of the multigene cassette, as well as the entire cassette, evolved by lateral gene transfer. AlgJ and the other type II membrane proteins, although more diverged than AlgI, contain conserved motifs, including a motif surrounding a highly conserved histidine residue, which is required for alginate O-acetylation activity by AlgJ. The AlgI homologs also contain an ordered series of motifs that included conserved amino acid residues in the cytoplasmic domain CD-4; the transmembrane domains TM-C, TM-D, and TM-E; and the periplasmic domain PD-3. Site-directed mutagenesis studies were used to identify amino acids important for alginate O-acetylation activity, including those likely required for (i) the interaction of AlgI with the O-acetyl precursor in the cytoplasm, (ii) the export of the O-acetyl group across the cytoplasmic membrane, and (iii) the transfer of the O-acetyl group to a periplasmic protein or to alginate. These results indicate that AlgI belongs to a family of membrane proteins required for modification of polysaccharides and that a mechanism requiring an AlgI homolog and a type II membrane protein has evolved by lateral gene transfer for the esterification of many bacterial extracellular polysaccharides.

Indexed as

Evolution, MolecularGene Transfer, HorizontalAcetylationAlginatesAmino Acid MotifsAmino Acid SequenceBacterial ProteinsBiofilmsConserved SequenceGlucuronic AcidGram-Negative BacteriaGram-Positive BacteriaHexuronic AcidsMembrane ProteinsModels, MolecularMolecular Sequence DataAlginatesAlgI protein, Pseudomonas aeruginosaAlgJ protein, Pseudomonas aeruginosaBacterial ProteinsGlucuronic AcidHexuronic AcidsMembrane Proteins

Identifiers

PMID15231808
PMCPMC438637
OpenAlexW2077482089

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.