Evidence map›Paper›PMID 15231783›Full record

ArticleJournal of bacteriology2004

Synthesis of the heteropolysaccharide O antigen of Escherichia coli O52 requires an ABC transporter: structural and genetic evidence.

Lu Feng, Sof'ya N Senchenkova, Jinghua Yang, Alexander S Shashkov, Jiang Tao, Hongjie Guo, Jiansong Cheng, Yi Ren, Yuriy A Knirel, Peter R Reeves and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 59 citations in OpenAlex.

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  8. Microbial genomics · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Lu FengTEDA School of Biological Sciences and Biotechnology, Nankai University, Tianjin Biochip Technology Corporation, Tianjin, People's Republic of China.
Sof'ya N Senchenkova
Jinghua Yang
Alexander S Shashkov
Jiang Tao
Hongjie Guo
Jiansong Cheng
Yi Ren
Yuriy A Knirel
Peter R Reeves
Lei Wang
Tianjin Economic-Technological Development Area · CNN.D. Zelinsky Institute of Organic Chemistry · RUNankai University · CNUniversity of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structural and genetic organization of the Escherichia coli O52 O antigen was studied. As identified by sugar and methylation analysis and nuclear magnetic resonance spectroscopy, the O antigen of E. coli O52 has a partially O-acetylated disaccharide repeating unit (O unit) containing D-fucofuranose and 6-deoxy-D-manno-heptopyranose, as well as a minor 6-deoxy-3-O-methylhexose (most likely, 3-O-methylfucose). The O-antigen gene cluster of E. coli O52, which is located between the galF and gnd genes, was found to contain putative genes for the synthesis of the O-antigen constituents, sugar transferase genes, and ABC-2 transporter genes. Further analysis confirmed that O52 employs an ATP-binding cassette (ABC) transporter-dependent pathway for translocation and polymerization of the O unit. This is the first report of an ABC transporter being involved in translocation of a heteropolysaccharide O antigen in E. coli. Genes specific for E. coli O52 were also identified.

Indexed as

ATP-Binding Cassette TransportersBase CompositionCarbohydratesDeoxy SugarsDisaccharidesDNA, BacterialEscherichia coliEscherichia coli ProteinsFucoseMagnetic Resonance SpectroscopyMethylationMolecular Sequence DataMultigene FamilyO AntigensOpen Reading FramesSequence Analysis, DNA6-deoxy-manno-heptopyranoseATP-Binding Cassette TransportersCarbohydratesDeoxy SugarsDisaccharidesDNA, BacterialEscherichia coli ProteinsFucoseO AntigensTransferases

Identifiers

PMID15231783
PMCPMC438562
OpenAlexW2113486824

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.